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AT1G77750.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribosomal protein S13/S18 family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal protein S13/S18 family; FUNCTIONS IN: structural constituent of ribosome, RNA binding, nucleic acid binding; INVOLVED IN: translation; LOCATED IN: mitochondrion, small ribosomal subunit, mitochondrial small ribosomal subunit; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S13, conserved site (InterPro:IPR018269), Ribosomal protein S13-like, H2TH (InterPro:IPR010979), Ribosomal protein S13 (InterPro:IPR001892); BEST Arabidopsis thaliana protein match is: Ribosomal protein S13/S18 family (TAIR:AT5G14320.1); Has 8693 Blast hits to 8691 proteins in 3066 species: Archae - 159; Bacteria - 5380; Metazoa - 191; Fungi - 172; Plants - 691; Viruses - 0; Other Eukaryotes - 2100 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0099eggNOG:KOG3311EMBL:AC012193EMBL:BT010186
EMBL:CP002684EnsemblPlants:AT1G77750EnsemblPlants:AT1G77750.1entrez:844111
Gene3D:4.10.910.10GeneID:844111Genevisible:Q9CA19GO:GO:0003735
GO:GO:0005739GO:GO:0005763GO:GO:0006412GO:GO:0019843
Gramene:AT1G77750.1HAMAP:MF_01315hmmpanther:PTHR10871HOGENOM:HOG000039879
InterPro:IPR001892InterPro:IPR010979InterPro:IPR018269InterPro:IPR027437
KEGG:ath:AT1G77750KO:K02952OMA:HQHGDELPaxDb:Q9CA19
Pfam:PF00416Pfam:Q9CA19Pfscan:PS50159PhylomeDB:Q9CA19
PIR:D96807PRIDE:Q9CA19PRO:PR:Q9CA19PROSITE:PS00646
PROSITE:PS50159ProteinModelPortal:Q9CA19Proteomes:UP000006548RefSeq:NP_177898.1
scanprosite:PS00646SMR:Q9CA19STRING:3702.AT1G77750.1SUPFAM:SSF46946
TAIR:AT1G77750UniGene:At.34407UniProt:Q9CA19
Coordinates (TAIR10) chr1:-:29230346..29231490
Molecular Weight (calculated) 17273.10 Da
IEP (calculated) 11.66
GRAVY (calculated) -0.71
Length 154 amino acids
Sequence (TAIR10)
(BLAST)
001: MLGLRRSATT LFDISQSLLR NVTFHGLRVQ GIRVGNAEVP NNKPLKTGLQ EVYGIGRRKS HQVLCHLGIT NKLARDLTGK ELIDLREEVG QHQHGDELRR
101: RVGSEIQRLV EVDCYRGSRH RHGLPCRGQR TSTNARTKKG KAVAIAGKKK APRK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)