AT1G77700.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.986 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Pathogenesis-related thaumatin superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Pathogenesis-related thaumatin superfamily protein; CONTAINS InterPro DOMAIN/s: Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: thaumatin-like protein 3 (TAIR:AT1G75030.1); Has 1591 Blast hits to 1571 proteins in 178 species: Archae - 0; Bacteria - 39; Metazoa - 54; Fungi - 86; Plants - 1401; Viruses - 2; Other Eukaryotes - 9 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:+:29204747..29206217 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 39537.90 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.81 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.05 | ||||||||||||||||||||||||||||||||||||
| Length | 356 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDRTIEIEFD INGPYDSLIR PNISVASLTS RSENNITFDP KIFSSKDANS FRFVTKDLVT LSHHIIRVWI TIRTPVNYST GTKWSESARV FTIINSCDQT 101: IWPAITPGEN FNGGGFELKP GQSIVFHAPV GWSGRIWGRT GCKFDSTGTG TCETGSCGST LKCSASGKPP ASLAEFTLAA LDFYDVSLVD GFNLPMSVTP 201: MNGKGNCSVA GCVADLRPHC PQELAVKSNG KVISCRSACD VFDRDEYCCR GVYGNPVVCQ PTYYSKIFKQ ACPTAYSYAY DDPTSIMTCT ASDYVISFCS 301: SRFVLFTFLT TSHDYFNYDS NQVSFILDHD FYIYMIYFIH PLLISYAKVK VIQMQK |
||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)