AT1G77600.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ARM repeat superfamily protein | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT5G47690.1); Has 643 Blast hits to 552 proteins in 160 species: Archae - 0; Bacteria - 6; Metazoa - 186; Fungi - 121; Plants - 288; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:29152890..29162156 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 154306.00 Da | ||||||||||||||||||||||||
| IEP (calculated) | 7.93 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.24 | ||||||||||||||||||||||||
| Length | 1367 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MEKTPTQIVS ELCSRLLQLS RPNKDSLVKL LREVANTLSK IDQPSATNKE KGLKLIEAEL RPLKKSIIKH ALLKNRDNDV SLLVTVCVSE LFRILAPHLP 0101: FEDEYLRDIF TLFIAEFSEL SDTVSPYFSK RAKILETVSR LKFCLLMLDE DCQDLVHEMF NMFFSLVREH HQQSLINQKS MKTQQRKANT QQTQHSLFNN 0201: ILAIMSDVLE EEANSSFVVV ILENLVKEGE DTTSGADKLA SSLIERCADR LEPLICSFLT SCFMEKDSIQ TNLKDSYHEI IFKISLIAPQ MLLAVIPKLT 0301: QELLTDQVDV RIKALNLAGR IFAQPKHCLS SYVETYQDLY AEFLRRFSDK SAEVRMAALK CGKQCYFANP SGNKASGVLT AIQERLLDFD DRVRTQALIV 0401: ACDIMKFNMK YVPLNLISEA SERLRDKKIS VRKKALQKLT EVYQDYCDKC SEGDMTITDN FEQIPCKILL LCCEKNCEEF RSQNLELVLS DDLFPRLLPV 0501: EERMRHWVQC FAIMNHIHLK SLNSILSQKR RLQNELRHCL TLWRKAKVDN IEEAQRKKKS YFVKLSACFP DASEAEDLFE KLDRMRDASI FDVLTLLLEE 0601: LSSTNAQIIK EKFLKMIGVK HSLFEFLRIL STKCSPSIFS SEHVQCLLNQ LCGSTSANTQ LKAPSIKLLL VILNMFPSYL RGSEKQFLKL LEENDSAADE 0701: LIVVLSKAAP YISVNFGDYY PVLEKVCLEG TRSQTKCAVS AISSLAGSSE KSVFSELCEM LMDSLLCGRN IPTTLQSLAC VGQYSVLEYD NIYEDITSYI 0801: YRVFQAEPSD NQLPCDQSSG CCNSCKLKIY GLKTLVKSFL PRHGQVVRKI DDLLNILKKT LKSQGHDGIK SWCLFVLEIC SEDTGANVRL AAAKAVLLLS 0901: RKWDLHISPE VFRLTILMAK SFRYINGFIN KATRESRTCR DLDQGESLTD SPVYMTVFLI HVLAHDPEFP SEDCRDEHIY ARFCGPLFSV LQVLLSINNN 1001: GFTIKETAPF LFCIFRAIKR AEDAVDSRKT PRLHILADIG YSAVNILNSI VVTSPQAPRS ILLPSSLYSL TSITDNQNKA KSRTRNALEQ SFIERIVHIF 1101: QSQISMHDQR CQKDSLAVGS EDKVLPPLLG NQIETSITGS TEASQNNTRC SRKRTHLGEH ISCNSLSLRT VESEIPIKKL ERHTTCAKES VKASVSNKIT 1201: SSKHSGVVSA LKDISNHGEA IIGQRIKLLS PTDGCFYPGT VEKFNSKSNS HKIIFDNGDV ELVCLDSESW ETLSHESMGQ QERLGKETES YGSRNCVPEI 1301: SHTLAKVTAQ KQTTTTKQQN KKVPAKLNPP AAKSKKGNSD SGEGSVSEVT DTSDNIGPRR SRRQRIS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)