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AT1G77440.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.500
nucleus 0.500
ASURE: cytosol,nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : 20S proteasome beta subunit C2
Curator
Summary (TAIR10)
Encodes beta subunit of 20s proteosome complex which is involved in protein degradation.
Computational
Description (TAIR10)
20S proteasome beta subunit C2 (PBC2); FUNCTIONS IN: peptidase activity, endopeptidase activity, threonine-type endopeptidase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome core complex, proteasome complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome, beta-type subunit, conserved site (InterPro:IPR016050), Proteasome, subunit alpha/beta (InterPro:IPR001353); BEST Arabidopsis thaliana protein match is: proteasome beta subunit C1 (TAIR:AT1G21720.1); Has 3260 Blast hits to 3260 proteins in 438 species: Archae - 506; Bacteria - 38; Metazoa - 1206; Fungi - 812; Plants - 276; Viruses - 0; Other Eukaryotes - 422 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G77440-MONOMERBioCyc:ARA:GQT-2497-MONOMERBioGrid:29299EC:3.4.25.1
eggNOG:ENOG410XSC8eggNOG:KOG0180EMBL:AC010704EMBL:AF043533
EMBL:AF385730EMBL:AY081735EMBL:CP002684EnsemblPlants:AT1G77440
EnsemblPlants:AT1G77440.1EnsemblPlants:AT1G77440.2entrez:844080Gene3D:3.60.20.10
GeneID:844080Genevisible:O81153GO:GO:0000502GO:GO:0004298
GO:GO:0005634GO:GO:0005737GO:GO:0005839GO:GO:0051603
Gramene:AT1G77440.1Gramene:AT1G77440.2hmmpanther:PTHR11599hmmpanther:PTHR11599:SF62
HOGENOM:HOG000090523InParanoid:O81153IntAct:O81153InterPro:IPR001353
InterPro:IPR016050InterPro:IPR023333InterPro:IPR029055KEGG:ath:AT1G77440
KO:K02735merops:T01.983OMA:PNMEPDEPaxDb:O81153
Pfam:O81153Pfam:PF00227Pfscan:PS51476PhylomeDB:O81153
PIR:F96803PIR:T51981PRIDE:O81153PRO:PR:O81153
PROSITE:PS00854PROSITE:PS51476ProteinModelPortal:O81153Proteomes:UP000006548
Reactome:R-ATH-1236978Reactome:R-ATH-174184Reactome:R-ATH-349425Reactome:R-ATH-5632684
Reactome:R-ATH-68949Reactome:R-ATH-69017Reactome:R-ATH-983168RefSeq:NP_001031294.1
RefSeq:NP_565156.1scanprosite:PS00854SMR:O81153STRING:3702.AT1G77440.1
SUPFAM:SSF56235TAIR:AT1G77440tair10-symbols:PBC2UniGene:At.10755
UniProt:O81153
Coordinates (TAIR10) chr1:+:29096334..29098105
Molecular Weight (calculated) 22760.50 Da
IEP (calculated) 5.70
GRAVY (calculated) -0.02
Length 204 amino acids
Sequence (TAIR10)
(BLAST)
001: MSIFEYNGSA VVAMVGKNCF AIASDRRLGV QLQTIATDFQ RISKIHDHLF IGLSGLATDV QTLYQRLVFR HKLYQLREER DMKPETFASL VSAILYEKRF
101: GPFLCQPVIA GLGDDNKPFI CTMDSIGAKE LAKDFVVSGT ASESLYGACE AMFKPDMEAE ELFETISQAL LSSVDRDCLS GWGGHVYVVT PKEVKERILK
201: GRMD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)