AT1G77340.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G65560.1); Has 44266 Blast hits to 12730 proteins in 287 species: Archae - 5; Bacteria - 39; Metazoa - 433; Fungi - 553; Plants - 42031; Viruses - 0; Other Eukaryotes - 1205 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:29068620..29069828 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 45418.10 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.73 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.05 | ||||||||||||||||||||||||||||||||||||
| Length | 402 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MPITLNCLRT KLAEQSISKI SYPFYTPSHV SSLFSLNLDP QTALSFSDWI SRIPNFKHNV TSYASLVTLL CSQEIPYEVP KITILMIKSC NSVRDALFVV 101: DFCRTMRKGD SFEIKYKLTP KCYNNLLSSL ARFGLVEEMK RLYTEMLEDL VSPDIYTFNT LVNGYCKLGY VVEAKQYVTW LIQAGCDPDY FTYTSFITGH 201: CRRKEVDAAF KVFKEMTQNG CHRNEVSYTQ LIYGLFEAKK IDEALSLLVK MKDDNCCPNV RTYTVLIDAL CGSGQKSEAM NLFKQMSESG IKPDDCMYTV 301: LIQSFCSGDT LDEASGLLEH MLENGLMPNV ITYNALIKGF CKKNVHKAMG LLSKMLEQNL VPDLITYNTL IAGQCSSGNL DSAYRLLSLM EESGLVPNQR 401: TV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)