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AT1G77310.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
BEST Arabidopsis thaliana protein match is: wound-responsive family protein (TAIR:AT1G21610.1); Has 493 Blast hits to 482 proteins in 163 species: Archae - 0; Bacteria - 100; Metazoa - 172; Fungi - 66; Plants - 65; Viruses - 7; Other Eukaryotes - 83 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IFYEeggNOG:ENOG4110PZKEMBL:CP002684EnsemblPlants:AT1G77310
EnsemblPlants:AT1G77310.1entrez:844067GeneID:844067Gramene:AT1G77310.1
hmmpanther:PTHR21669hmmpanther:PTHR21669:SF13InParanoid:F4I700InterPro:IPR014840
iPTMnet:F4I700KEGG:ath:AT1G77310OMA:HPQSKAHPaxDb:F4I700
Pfam:PF08729PRIDE:F4I700ProteinModelPortal:F4I700Proteomes:UP000006548
RefSeq:NP_177855.4TAIR:AT1G77310UniGene:At.34502UniProt:F4I700
Coordinates (TAIR10) chr1:+:29051671..29056179
Molecular Weight (calculated) 79147.50 Da
IEP (calculated) 9.26
GRAVY (calculated) -0.83
Length 717 amino acids
Sequence (TAIR10)
(BLAST)
001: MEDEPKLPTD DGPTFNESCK ISSEILTAGD RKLLKVELLK EETTLVSWKK LMDEASKENG GLFVSAPERL LNANPNLEFR LAPGAQTENE MVNQPHPNRL
101: NSVIAKIERL YMGKDGSDGE ELDGAPDDDD YDTEDSFIDD AELDEYFEVD NSPIKHDGFF VNRGKLERIE PSATSNQQQP KKRRRKESAK PCGDVVDVSR
201: KRAKMAKTAG GKDQSASPGP SSKKISNDSK TVQDSFSPLK AQNGNDSLVL ENVKHTDKAN HQPMNATSPK SKAAGSSGPL HPKCSSKSVH EQSNSPPGKS
301: RPNVSAKSAV VRQQVNNGMP DLDIATESKT SIQISKKSGS NGRPKYSTLE KAIRNLEKLV AESRPPAATE NQDADISSQA VKRGLPGDVK LHLAKVARIA
401: YASQGEISGE LINRLMGIVG HLIQIRSLKR NLKIMIDSIV TANREKDTRF QRIKSEITEM LKTQVPLVES QETNQEAGTS DDFQDVGSLG KSPVKKFVMD
501: VALEEKLCDL YDVFVEGMDE HSGSQIRKLY SDLAQLWPNS LVDNHEIRRA ICREKERRRA LEGNIGKEMD QTKITKKKQT QLVPKSEGIT YPDKTSGVEV
601: KASVVLTATT TSLVDCQPAA DSSFERSKQQ HEKLKRTSSL SNPAAEGKKV RRKTEPALEE THLPAEKPLV LALKRQTHLK SKTHKQVQVH PQSKAHKQAQ
701: VHPKAKTQTP PDLNLPS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)