AT1G76820.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.973 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : eukaryotic translation initiation factor 2 (eIF-2) family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
eukaryotic translation initiation factor 2 (eIF-2) family protein; FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation initiation factor 2 related (InterPro:IPR015760), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 2 (eIF-2) family protein (TAIR:AT1G76720.1); Has 81525 Blast hits to 72045 proteins in 3821 species: Archae - 1058; Bacteria - 36272; Metazoa - 16881; Fungi - 5065; Plants - 2256; Viruses - 195; Other Eukaryotes - 19798 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:28837796..28842343 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 129996.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.19 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.74 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1166 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MGRKEPSSRG GDDEQPLASS LVGSKSDKKS VQIDDDEYSI CLEEPKVEEN KVVITGKKKG KKRNKKGTQQ QQDDDDDFAD KFAVEEEVVP DNAFVGNNKK 0101: SKGKKDGGSV SFALLADEDN REEAEDNDIT FSGRKKSSKK KSSSVLASIG DEESSQSKTS DSKSVELVES ARSKKHKKKN KSGRTLQEDD DLDKLLAELG 0201: ETPAAGKPAS EEEKDQAQPE PVAPVENTGE KEKRRLLRLL QPRKRKRRRR KKRKKKAAAA AAATSSVEAK EEKQEESVTE PLQPRKKDAK GKAAEKKIPK 0301: HVREIQEALA RRQEAKERKK KEEEEKLRKE EEERRRQEEL DAQAEEAKRK RKEKEKEKLL RKKLEGKLLT AKQKSEAQKR EAFKNQLLAA GGGLPVADDD 0401: DDATSSKRPI YANKKKSSRQ KGNDTSVQVE GEVEPKENHA LGEVGSADTE KVDLLESANL GEKSGGPADV AQENGVEEDD EWDAKSWDNV DLKIRGDFDD 0501: KEEEAQHVVK KEFKAHYSDH ETEKPTAKPA GMSKLETAAV KAISEVEDAA TQTKRAKKGK CLAPNEFIEE GGEKLRSIIC CIMGHVDSGK TKLLDCIRGT 0601: NVQEGEAGGI TQQIGATYFP AKNIRERTRE LKADAKLKVP GLLVIDTPGH ESFTNLRSRG SSLCDLAILV VDITHGLQPQ TIESLNLLRM RNTEFIIALN 0701: KVDRLYGWKT CKNAPIVKAM KQQNKDVINE FNLRLKKIIN EFQEQGLNTE LYYKNKDMGE TFSIVPTSAI SGEGVPDLLL WLVQWAQKTM VEKLTYVDEV 0801: QCTVLEVKVI EGHGTTIDVV LVNGELHEGD QIVVCGLQGP IVTTIRALLT PHPMKELRVK GTYLHHKEIK AAQGIKITAQ GLEHAIAGTS LHVVGPDDDI 0901: EAMKESAMED MESVLSRIDK SGEGVYVQTS TLGSLEALLE FLKTPAVNIP VSGIGIGPVH KKDIMKAGVM LEKKKEYATI LAFDVKVTTE ARELADEMGV 1001: KIFCADIIYQ LFNQFQVYIE NIKEEKKKES AGEAVFPCVL QILPNCVFNK RDPIILGVKV HDGILKIGTP ICVPGREFTD IGRIASIENN HKPVDYAEKG 1101: DEVAIKIVAS NREEQKMFGR HFDMEDELVS HISRRSIDIL KADYMKEMST EKWKLLLKLK RIFKIP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)