AT1G74630.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.824 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G29760.1); Has 36912 Blast hits to 14171 proteins in 263 species: Archae - 0; Bacteria - 21; Metazoa - 80; Fungi - 95; Plants - 36068; Viruses - 0; Other Eukaryotes - 648 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:28030521..28032452 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 72230.30 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.41 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.06 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 643 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTIAIHHCLS LLNSCKNLRA LTQIHGLFIK YGVDTDSYFT GKLILHCAIS ISDALPYARR LLLCFPEPDA FMFNTLVRGY SESDEPHNSV AVFVEMMRKG 101: FVFPDSFSFA FVIKAVENFR SLRTGFQMHC QALKHGLESH LFVGTTLIGM YGGCGCVEFA RKVFDEMHQP NLVAWNAVIT ACFRGNDVAG AREIFDKMLV 201: RNHTSWNVML AGYIKAGELE SAKRIFSEMP HRDDVSWSTM IVGIAHNGSF NESFLYFREL QRAGMSPNEV SLTGVLSACS QSGSFEFGKI LHGFVEKAGY 301: SWIVSVNNAL IDMYSRCGNV PMARLVFEGM QEKRCIVSWT SMIAGLAMHG QGEEAVRLFN EMTAYGVTPD GISFISLLHA CSHAGLIEEG EDYFSEMKRV 401: YHIEPEIEHY GCMVDLYGRS GKLQKAYDFI CQMPIPPTAI VWRTLLGACS SHGNIELAEQ VKQRLNELDP NNSGDLVLLS NAYATAGKWK DVASIRKSMI 501: VQRIKKTTAW SLVEVGKTMY KFTAGEKKKG IDIEAHEKLK EIILRLKDEA GYTPEVASAL YDVEEEEKED QVSKHSEKLA LAFALARLSK GANIRIVKNL 601: RICRDCHAVM KLTSKVYGVE ILVRDRNRFH SFKDGSCSCR DYW |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)