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AT1G74200.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.705
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : receptor like protein 16
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
receptor like protein 16 (RLP16); CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: receptor like protein 13 (TAIR:AT1G74170.1); Has 78773 Blast hits to 22315 proteins in 841 species: Archae - 22; Bacteria - 2210; Metazoa - 13539; Fungi - 553; Plants - 58397; Viruses - 0; Other Eukaryotes - 4052 (source: NCBI BLink).
Protein Annotations
eggNOG:COG4886eggNOG:KOG0619EMBL:CP002684EnsemblPlants:AT1G74200
EnsemblPlants:AT1G74200.1entrez:843760Gene3D:3.80.10.10GeneID:843760
Gramene:AT1G74200.1hmmpanther:PTHR27004hmmpanther:PTHR27004:SF29InParanoid:F4HTV6
InterPro:IPR001611InterPro:IPR032675KEGG:ath:AT1G74200OMA:FRWILDA
PaxDb:F4HTV6Pfam:PF00560Pfam:PF13855PRIDE:F4HTV6
ProteinModelPortal:F4HTV6Proteomes:UP000006548RefSeq:NP_177560.2SMR:F4HTV6
STRING:3702.AT1G74200.1SUPFAM:SSF52058TAIR:AT1G74200tair10-symbols:AtRLP16
tair10-symbols:RLP16UniGene:At.18157UniProt:F4HTV6
Coordinates (TAIR10) chr1:-:27907739..27908647
Molecular Weight (calculated) 33466.10 Da
IEP (calculated) 9.04
GRAVY (calculated) 0.19
Length 302 amino acids
Sequence (TAIR10)
(BLAST)
001: MNLTTNGFQR NLPSSLGNME MIEFLDISHN SFHGKLPRSF LKGCDSLIVL KLSHKKLSEE VFPEASNFFS ILELSMDNNL FTGKIGRGLQ SLRSLIMLDI
101: SNNNLSGVIP SWFDQLQDLH SLQISNNLLE GEVPISLFNM SSLQLLALSA NSLSGDLPQA ISGYGALKVL LLRDNNLSGV IPDTLLGKNI IVLDLRNNRL
201: SGNIPEFINT QYIRILLLRG NNLTGSIPRR LCAVRSIHLL DLANNKLNGS IPSCLRNASL GLGRGGYIRR LFIIITFFLW EHLSVHFSNL CSCKMGLLSI
301: MS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)