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AT1G74140.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
FP Images

Arabidopsis cell culture (plastidal marker)

At1g74140-GFP
(full-length)		plastidal marker-RFPoverlay

Images by Sandra Tanz
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Rhomboid-related intramembrane serine protease family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)		 Rhomboid-related intramembrane serine protease family protein; FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane, chloroplast; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: Rhomboid-related intramembrane serine protease family protein (TAIR:AT1G74130.1); Has 861 Blast hits to 861 proteins in 374 species: Archae - 8; Bacteria - 572; Metazoa - 38; Fungi - 80; Plants - 52; Viruses - 0; Other Eukaryotes - 111 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0705eggNOG:KOG2980EMBL:AC079678EMBL:AY735564
EMBL:AY735565EMBL:CP002684EMBL:DQ446427EMBL:DQ446428
EnsemblPlants:AT1G74140EnsemblPlants:AT1G74140.1EnsemblPlants:AT1G74140.2EnsemblPlants:AT1G74140.3
EnsemblPlants:AT1G74140.4EnsemblPlants:AT1G74140.5entrez:843754ExpressionAtlas:B3H707
Gene3D:1.20.1540.10GeneID:843754Genevisible:B3H707GO:GO:0004252
GO:GO:0016021GO:GO:0031969hmmpanther:PTHR22936hmmpanther:PTHR22936:SF17
HOGENOM:HOG000064690InParanoid:B3H707InterPro:IPR002610InterPro:IPR022764
KEGG:ath:AT1G74140MEROPS:S54.A07OMA:IALLDMFPANTHER:PTHR22936
PaxDb:B3H707Pfam:PF01694PhylomeDB:B3H707PIR:E96769
PRIDE:B6EUB0PRO:PR:B3H707ProteinModelPortal:B3H707Proteomes:UP000006548
RefSeq:NP_001031280.1RefSeq:NP_001077819.1RefSeq:NP_001077820.1RefSeq:NP_001117599.1
RefSeq:NP_177554.2STRING:3702.AT1G74140.5SUPFAM:SSF144091TAIR:AT1G74140
TMHMM:TMhelixUniGene:At.50966UniProt:B6EUB0
Coordinates (TAIR10) chr1:+:27876928..27879584
Molecular Weight (calculated) 34303.00 Da
IEP (calculated) 11.09
GRAVY (calculated) 0.27
Length 317 amino acids
Sequence (TAIR10)
(BLAST) 		001: MHAIFSSFSR KVVVNVGASS QSQLTKMVKK KPNQSRHLLP SRLSSPSSVP HFVPSAVSRS AKVHGFFASK LGNTNLKLKF GNVMESRAGF FSSELPSHGF
101: ESGGFTGFQK RGWKSWINGA NGVVFGLVIA NAAVFTMWRV SDRSWMLSTY SFTSGYIHTL ITSGFSHIGT SQIILNMIGI SYFGSRIART LGPLYLLKLY
201: FAGALGGSVC FLSYHALLAT LKGEGVVIKD HQSTAPISQL LGADGSMFAI ALLDMFIYPK VTTYFALMLR VHRIINLGVE ILNIPEGGPN HIASSSGQLG
301: GVVVAAMAWA RIKKGRF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)