AT1G73650.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 0.788 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF1295) | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FUNCTIONS IN: oxidoreductase activity, acting on the CH-CH group of donors; INVOLVED IN: lipid metabolic process; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal (InterPro:IPR001104), Protein of unknown function DUF1295 (InterPro:IPR010721); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1295) (TAIR:AT1G18180.1); Has 2028 Blast hits to 2028 proteins in 336 species: Archae - 0; Bacteria - 496; Metazoa - 80; Fungi - 120; Plants - 113; Viruses - 0; Other Eukaryotes - 1219 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:27688549..27690165 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 33060.70 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.50 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.52 | ||||||||||||||||||||||||||||||||
| Length | 291 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGTVLDSHFL ALTAIVTVIY QFIFFVITAL FKFDQVTDFA GSTNFVILAV LTLVLKASWH FRQIVLTLLV VVWGLRLGIF LLMRILQWGE DRRFDEQRGN 101: IVRLIIFWTL QAVWVWTVSL PLTLVNASDG GGSLKPADVI GWTMWVFGFL IEAAADQQKL SFKNSPENRG KWCDVGVWKY SRHPNYFGEM LLWWGIFVAA 201: SPVLEGAEYL VIFGPLFLTL LLLFVSGIPL LEASADKKHG NSGAYRSYKK TTSPLILFPR GVYGNLPGWF KTVFLFEFPF YSRNLPQEVA V |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)