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AT1G73530.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31186290 (2019): cytosol None
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24124904 (2013): plastid
  • PMID:18431481 (2008): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNA-binding (RRM/RBD/RNP motifs) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G54580.1); Has 7 Blast hits to 7 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0724eggNOG:KOG0118EMBL:AC012396EMBL:BT021981
EMBL:BT028910EMBL:CP002684EnsemblPlants:AT1G73530EnsemblPlants:AT1G73530.1
entrez:843687Gene3D:3.30.70.330GeneID:843687GO:GO:0000166
GO:GO:0003676GO:GO:0009507Gramene:AT1G73530.1hmmpanther:PTHR24012
HOGENOM:HOG000152583InterPro:IPR000504InterPro:IPR003954InterPro:IPR012677
KEGG:ath:AT1G73530OMA:KAIQGMHPfam:PF00076Pfscan:PS50102
PhylomeDB:Q9FX45PIR:A96762PROSITE:PS50102Proteomes:UP000006548
RefSeq:NP_177494.1SMART:SM00360SMART:SM00361SMR:Q9FX45
STRING:3702.AT1G73530.1SUPFAM:SSF54928TAIR:AT1G73530UniGene:At.34984
UniProt:Q9FX45
Coordinates (TAIR10) chr1:-:27643801..27645386
Molecular Weight (calculated) 20064.20 Da
IEP (calculated) 10.66
GRAVY (calculated) -0.32
Length 181 amino acids
Sequence (TAIR10)
(BLAST)
001: MAISLGRVVV PSCTISGDRL FIPNFSAICS VSCGRINVGT GVISARRRRD IGGVLISSCL STDSSSSPPS SSSGPKTKLY VSGLSFRTTE DTLRDTFEQF
101: GNLIHMNMVM DKVANRPKGF AFLRYETEEE AMKAIQGMHG KFLDGRVIFV EEAKTRSDMS RAKPRRDFPK PQSKPRTFRT W
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)