AT1G73290.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : serine carboxypeptidase-like 5 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
serine carboxypeptidase-like 5 (scpl5); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase-like 3 (TAIR:AT1G73280.1); Has 4100 Blast hits to 3987 proteins in 474 species: Archae - 0; Bacteria - 591; Metazoa - 640; Fungi - 845; Plants - 1580; Viruses - 0; Other Eukaryotes - 444 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:27556397..27558770 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 49984.70 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.58 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.22 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 438 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MANYISSVLK SLLLLLHLVF LIQQHVDSAS IVKFLPGFEG SLPFELETGY IGIGEEEEVQ LFYYFIKSER NPKEDPLLLW LSGGPGCSSI SGLLFENGPL 101: AMKLDVYNGT LPSLVPTTYS WTKTSSMIFL DQPVGTGFSY SRTQQYNKPS DSGEAKRIHE FLQKWLSKHQ EFSSNPFYVA GDSYSGMVVP ATVQEISKGN 201: YQCCSPPINL QGYVLGNPIT EHAIDYNYRI PFAHGMALIS DELYESLKRV CKGEYVDPRD TECLKLVEEF SKCTKGVCQE VVIKPLCVTE TPNCYIYRYL 301: LTTYWVNDVN VRKALQINKE SIGEWVRCYF GIPYTHDIKS SVPYHMNNSI NGYRSLIYSG DHDLNVPFLA TQAWVRSLNY SIIDNWRPWM IKDQIGGYTK 401: TYANKMTFAT VRASGHTAEY KPYETYIMFH RWINGQPL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)