AT1G73066.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Leucine-rich repeat family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Leucine-rich repeat family protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: embryo, pedicel, carpel, stamen; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: PEP1 receptor 1 (TAIR:AT1G73080.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:27481785..27483581 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 65512.20 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.01 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.02 | ||||||||||||||||||||||||||||||||||||||||
| Length | 598 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MENLGLFQIL LLFCLFVSVR IVSVSCLNSD GLTLLSLRKH LDKVPPELTS TWKTNASEAT PCNWFGIICD DSKKVTSLNF TGSGVSGQLG PEIGQLKSLE 101: ILDMSSNNFS GIIPSSLGNC SSLVYIDLSE NSFSGKVPDT LGSLKSLADL YLYSNSLTGE LPKSLFRIPV LNYLHVEHNN LTGLIPQNVG EAKELLHLRL 201: FDNQFTGTIP ESIGNCSKLE ILYLHKNKLV GSLPASLNLL ESLTDLFVAN NSLRGTVQFG STKCRNLVTL DLSYNEFEGG VPPELGNCSS LDALVIVSGN 301: LSGTIPSSLG MLKNLTILNL SENRLSGSIP AELGNCSSLN LLKLNDNQLV GGIPSALGKL RKLESLELFE NRFSGEIPIE IWKIQSLTQL LVYRNNLTGK 401: LPEEITKLKN LKIVTLFNNS FYGVIPPNLG LNSNLEIIDF IGNNFTGEIP RNLCHGKMLT VFNLGSNRLH GKIPASVSQC KTLSRFILRE NNLSGFLPKF 501: SKNQDLSFLD LNSNSFEGPI PRSLGSCRNL TTINLSRNKL TRNIPRELEN LQNLSHLNLG SNLLNGTVPS KFSNWKELTT LVLSGNRFSG FVPPDRHS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)