AT1G72960.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.579 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Root hair defective 3 GTP-binding protein (RHD3) | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Root hair defective 3 GTP-binding protein (RHD3); CONTAINS InterPro DOMAIN/s: Root hair defective 3 GTP-binding (InterPro:IPR008803); BEST Arabidopsis thaliana protein match is: Root hair defective 3 GTP-binding protein (RHD3) (TAIR:AT3G13870.1); Has 479 Blast hits to 469 proteins in 183 species: Archae - 0; Bacteria - 2; Metazoa - 24; Fungi - 185; Plants - 127; Viruses - 0; Other Eukaryotes - 141 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:27446263..27450862 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 88823.80 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.24 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.33 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 795 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDADKSEGCC SVQLIDGDGI YNVSRIDHFI KDVKLADCGL SYAVVSIMGP QSSGKSTLLN HLFGTNFMEM DAFKGRSQTT KGIWLARCAG IEPCTLVMDL 101: EGTDGRERGE DDTAFEKQSA LFALAISDIV LINMWCHDIG REQAANKPLL KTVFQVMMRL FSPRKTTMLF VIRDKTRTPL ENLEPVLRED IQKIWDSVPK 201: PEAHKETPLS DFFNVEVVAL SSYEEKEEQF KEQIASLRQR FMHSIAPGGL AGDRRGVIPA SGFAFSADQI WRVIKENKDL DLPAHKVMVA TVRCEEIANE 301: KFAHFITNED WRKLDEEVQA GPVSNFGKRL TTILGSCLSE YDGEATFFDE GVRSSKRQQL EEKLLQLVNP AFQDVLGHIR WGILEKFKAS FDKALGIGEG 401: FSSASQDWFK ACMTQFDEEC AGAIIEQANW DTSKVRDKLV RDIEAHISSV RTSKLSELTS LYESKVHEAL SEPVEALLDG ANDETWSTVK KLHRRETESA 501: VSGLSSALAG FDMEEETRDR MVKSLQDYAR GVIETKAKEE AVRVLMRMKE RFGTIFSHDS DSMPRVWTGK EDLRAITKSA RSASLKLLSV MAVIRLGDEP 601: DNIEKTLTVA LLDPTKNDTS KKSITTSDPL ASSTWDEVPS SRTLITPVQC KSIWRQFKTE TEYTVTQAIS AQEANRRGNN WLPPPWAILA LIVLGFNEFM 701: TLLRNPLYLG VMFVAFLLAK ALWTQLDIPG EFRNGALPGL ISISAKFVPT VMNLIKNLAA QGEDPPAANP ENRRSSNNTS SSENPPDHKS SSKED |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)