AT1G72800.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.923 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RNA-binding (RRM/RBD/RNP motifs) family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: nucleolin like 2 (TAIR:AT3G18610.1); Has 429 Blast hits to 357 proteins in 85 species: Archae - 2; Bacteria - 90; Metazoa - 16; Fungi - 64; Plants - 227; Viruses - 2; Other Eukaryotes - 28 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:27397266..27398273 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 35336.50 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.85 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.23 | ||||||||||||||||||||||||||||||||
| Length | 335 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAESSKLSAT TVEAAPAMIK AKDVISPSEK EESDQTEITK VSVLKNLDEK EMIKEFADRL QRLEAKVDLL VTKADLLAIK ADIQELLISA KGEKVPAMKT 101: SAKASSESDD SYMDTSSEDE SSSAEEPVNK PAASAAKPAT KDSLFSAGFK PAAKDSLFSA GFKPDSLFSA GFEPAAKDSL FSAGFKPGSL FSAGFEPAAK 201: DSLFSAGFKP DSLFSVGVKP AAKDSLFSVG VNGRSFSVTG FDASLPVDDI KSALSKYFSS FGEITRVFVP PSHGTGGSLG YAYIDLKEGA EKALELGRHD 301: VGGWDLVVGK AEPIRSGSTW PFPGRCGNQG RCTFC |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)