AT1G72600.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.717 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : hydroxyproline-rich glycoprotein family protein | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT1G54215.1); Has 641 Blast hits to 614 proteins in 80 species: Archae - 2; Bacteria - 10; Metazoa - 113; Fungi - 43; Plants - 427; Viruses - 2; Other Eukaryotes - 44 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:27338272..27338679 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 15236.60 Da | ||||||||||||||||||||||||
| IEP (calculated) | 11.91 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.41 | ||||||||||||||||||||||||
| Length | 135 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEPSSQSSRL FLFCFVFFFI SASIFVDSKS QDSSSITPPP PPPPPPLSLS PPPSPITAIE SNKAIHEKHH HRRKKWRQRR HHKHPPPPPP KKQKVNTGKT 101: VGLFFAGVAA ALQVVVAAFL IFKRRQLLLK INDRH |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)