AT1G72480.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.934 What is SUBAcon? |
|
||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Lung seven transmembrane receptor family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Lung seven transmembrane receptor family protein; CONTAINS InterPro DOMAIN/s: Transmembrane receptor, eukaryota (InterPro:IPR009637); BEST Arabidopsis thaliana protein match is: Lung seven transmembrane receptor family protein (TAIR:AT2G01070.1); Has 596 Blast hits to 594 proteins in 172 species: Archae - 0; Bacteria - 0; Metazoa - 236; Fungi - 150; Plants - 154; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:-:27286304..27288339 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 57448.50 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 6.32 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.17 | ||||||||||||||||||||||||||||
| Length | 509 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLLHLLLLLC LSSSLKVQAS VHEYRSERFV SKGNAFVFHG GSEGIYSSSP SDNFTSDSDS VSFIRFEKIK FQRPEEVSNR SSLSIHAVVF EVEDRENIGG 101: SAYGGQRAVC CTSDLAKLGV CSHGDVIYRP SAKDSGWPQV FGVSLAENEF SVILPTRSIQ VTRTGMYNLY FIHCDSDLKD LVVEGKTIWK NPTGYLPGRM 201: APLMYFYGFM SLAFVLLGIF WFSQCARFWR EVLPLQNCLT LVITLGMCEM ALWYFDYAEF NETGIRPTVI TIWAVTFGSI KRTSARIIIL MVSMGYGVVR 301: PTLGGFTSKV IMLGVTFFIA SEILELMENV GAVSDLSGKA RLFFVLPVAI LDAFFIIWIF KSLSATFKKL QTRRLLVKLD IYRKFTNALA VDILVSLGWI 401: CYELYFKSKD VYNEHWQNAW IIPAFWQLLS FSLLIVICSL WAPSQNSTRY AFSGSSGDTS AEFEKDDYTL TLIKPSPIPS HEVKNLSETR LLPADEGEPE 501: KDLEEDKRE |
||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)