AT1G72270.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.783 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
CONTAINS InterPro DOMAIN/s: Ribosome 60S biogenesis N-terminal (InterPro:IPR021714); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G27010.1); Has 772 Blast hits to 657 proteins in 120 species: Archae - 0; Bacteria - 0; Metazoa - 344; Fungi - 94; Plants - 322; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:27199733..27211122 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 319865.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.62 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.01 | ||||||||||||||||||||||||||||||||
| Length | 2845 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MVAGKRKSDR NPTNVSDKLG LKDPLLRRLS SAAAVTNSFL QANDLFLSPS QTLRLESLIS SLPISPSPSS SSSAITTTTW FNRFLTSATE DEDDPRWCLY 0101: FRMSKSTFFS LYSILSHSSL PSFAATIFRL AHGASYECLV HRFGFDSTSQ ASRSFFTVCK LINEKLSQQL DDPKPDFSPN LLPNCYGVVG FGRFEVKGKL 0201: LGAKGSILVQ ALVDSNGRFV DISAGWPSTM KPEAIFRQTK LFSIAEEVLS GAPTKLGNGV LVPRYILGDS CLPLLPWLVT PYDLTSDEES FREEFNNVVH 0301: TGLHSVEIAF AKVRARWRIL DKKWKPETIE FMPFVITTGC LLHNFLVNSG DDDDSVEECV NGCEAGDNGE MRKDDDKEEE TRSFEGEAYR ESKRIRDAIA 0401: ENLSRRKLLL MVESTSDLED QGNEFFQEHK YADDALNSYL KVPVMAFRPS LEAKLRQLLH NICLHEFKLC SDTAKDFVKL LKGETGSDLL RLYFQSSPNF 0501: TELLEAWNLH HGKQGLSYIF SLIQTILSHP EGKSSDIGRA LDQFCRLLIE KKLLDIYKAL SNTKRLQNAA LSLLASIVRR GPGMASEMAR TFDFHGFPKQ 0601: APRRAFVEFA ISFLQVGKPS LLKSILEKKQ LYSQLLQGLE EDDDDTLASV LSTLKDKILV QESSLSPRLM SALFGPKTLE QLVIISERED GGIVNELAYD 0701: VLVKVCTDPS NGLMPDAYRK GNIKRLLALM KSLKATETGY PRDLLLAIIR GRPSLASAFF DEFPYNVEDF TSPYWFSSIS LAADLVSSVR MSSSFDFLNP 0801: DKPPSGGSEV HTIMKCICPR PFSQSLIARG MHHSVFLVKH GTLRFLWETL RLWDSFVTAW KLCSVDQIQA SLERDIIGEV ISFFPDFQVL WTVLKVSQKL 0901: SLKRKAELDI GLVDRKKRLK TSEMAVLEEL ASDMVIGGLG SDTNIFLEED TGDAQLTDQE DAENEYLGIV SEIWGSEFCS KPIASVDEAE MFFQIKLLDT 1001: LGIYVRSVPN VPKGLFDVFM KFLSSSSITA VGNTLFQQCA IVRSSLSHLK GVSIGFSPLI VCILQKCVKL LNSESQAYSL PNKSAVSLYV YSSLKYILQT 1101: QVDPRPLSCL VQSVLSEVVD GSKDSLCEWL PLRVLLLFTQ SLSEPFILHS GRTTCRLADT SFAATLDEIK GLMRSITPDE VGGVVNAFSS ALICATPESI 1201: LKNFASVMAV SWDLYGTSFS FLLSIIFLEK NFLGNLSKLS PDLFMRGLEL TVSRNLREGT VDSEIDFADH SSTTEKIKSK MDIPDIESLA FSVFLEQTPF 1301: PVLLNEIMSM DISCLPEFPR LTELLLLKVS QPKSDSIESD IRLILFWLFQ IRSLYKVQPH PVLCQQSEIC LRLMRHLFSQ ISKLDLVSGP SADKLKHQVP 1401: QTVLSHPVVM ALLESPADCD TLPRVQNVEV FSETLLTAGR LGISEIDQHI LDLLASTCEN FLFEESHIER KGDLRADKSI MAFKVLVERL LLVFRDKFEL 1501: CVGSQSYAPL LQHPQLIQAL LKFISPFKLL YLAHSMLSKT YEEELASPIL SFGLDIAGGA FEMLILYSRQ PAAKRRVYDF LWELEDKNYD SRIIEQVYSL 1601: ACRFSTSFGL ASADTCLLKV VSGIFRGGNS QHCSVHQLTV IMSQIVGRTS KDLIIHCINQ ASMSRAKILF YLVESSPLHL SVFGHIFFSM LSKLQGDSAL 1701: ITDDQFVMLL PPVLLFLASV FAKLEKSCSK CLDITSLYSN ILIKGFLQWP KFCSGCIFEE KYEEILLSTS EDIETMFNAS LLGKAVRMFQ YHFALTESPT 1801: KTDDLLKVFY SMFPHTSAGK EMLDYEIKEV DVKSVDQMFN ITNRLVAKVE LSRICLFPED SCMHHLKRQA GGCVKESSPE MGSNRESLLN PLLNAFVNTW 1901: QCVVERSDGY YKGNSEREEQ DKYWFLCKSL EYFILRSILK FLEGMCEELA HLDSLPFLER LMNLILRYRF KDSKTLKILR EIFSFLSRGK YSYHFQDLVS 2001: HSQFTESISS LSISSSHTGE VIRPVSSILK LLIIPNLNSV RVENCSLEAP EYYLSQIEIL KILGVLLCKC GKDSGIFLKD LHFRLLCSYG ATPSEIDLQS 2101: YKLMHDIKLI VGEHTLNDSE DYLWGNAALK IREGLPSDGS YSDIVEDLRQ SLFKENLCLD PKRCAQTVLY FPYGRTAEAS DNTYIYDDPI SEKCSPAIER 2201: YDPVFILRVS VQLLSMVYIE PVEFASLGLL AVAFASMSSA DLGIRKLGYE TLGIFVDVLE SCRKNMHVTV LRLLLTYVQN GVEEQWQRIP TVSAVFSAEA 2301: SLILLDSSHE HYVPIIKLLK RSSTLKLRGI PLFHDFFGSS TVNFRSQRLW VLRLVFVGLE SEEDAQIYIR NSILETVMGF FSSPLADDET KGLILQVVRK 2401: SVKLHKMARH LVENCGLLSW CSSFFSMLTT KPTGDEDSRF VVVLEVITDA LASRNDTEWS QRSALEGLME ISSRLYTLLG DGLVSMQENG TSILSATLKI 2501: SHKRKKNQPH FTITIEGIFQ LFEAAANCDS PQVEASAEGR LDTILMSTPP VEIICMDVHR LRRFLLWGSS TALKSDLKKG SKPGECHQDT KTHTEETMVA 2601: KFLRWLLASV ILGKLYSEAN DSDQIVLSET KPETLPTLLE YLKKRNLQGS VTNSEHIIGE VIVYLQKHLL CRNYGVLLPS VVFALSLMVL RNGLETTGTE 2701: SEGGYKVIRS LCSRISSPTE AIPVWRWSYH QDLPSERATD PKEIDELYAC QELLLIFSDM LRETPRESQQ TLLLGESFDM SSVFEWERVS SLSFPLLRFL 2801: PLLPQSSISL TVLPTILSFT DSGDDSLEEC VNGCEADDNG EQARA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)