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AT1G72210.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT1G22490.1); Has 1596 Blast hits to 1587 proteins in 129 species: Archae - 0; Bacteria - 0; Metazoa - 28; Fungi - 30; Plants - 1534; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Protein Annotations
BioGrid:28773eggNOG:ENOG410IWF3eggNOG:ENOG410YF8HEMBL:AC067754
EMBL:AJ459771EMBL:BT003871EMBL:BT006086EMBL:CP002684
EnsemblPlants:AT1G72210EnsemblPlants:AT1G72210.1entrez:843553Gene3D:4.10.280.10
GeneID:843553GO:GO:0003677GO:GO:0003700GO:GO:0005634
GO:GO:0006351GO:GO:0016597Gramene:AT1G72210.1hmmpanther:PTHR11969
hmmpanther:PTHR11969:SF22HOGENOM:HOG000238962InParanoid:Q9C7T4InterPro:IPR002912
InterPro:IPR011598KEGG:ath:AT1G72210ncoils:CoilOMA:CESSETK
PaxDb:Q9C7T4Pfam:PF00010Pfam:Q9C7T4Pfscan:PS50888
Pfscan:PS51671PhylomeDB:Q9C7T4PIR:F96745PRIDE:Q9C7T4
PRO:PR:Q9C7T4PROSITE:PS50888PROSITE:PS51671ProteinModelPortal:Q9C7T4
Proteomes:UP000006548RefSeq:NP_177366.1SMART:SM00353STRING:3702.AT1G72210.1
SUPFAM:SSF47459TAIR:AT1G72210UniGene:At.35130UniProt:Q9C7T4
Coordinates (TAIR10) chr1:+:27180066..27182268
Molecular Weight (calculated) 35973.80 Da
IEP (calculated) 5.14
GRAVY (calculated) -0.75
Length 320 amino acids
Sequence (TAIR10)
(BLAST)
001: MALEAVVYPQ DPFSYISCKD FPFYDLYFQE EEDQDPQDTK NNIKLGQGQG HGFASNNYNG RTGDYSDDYN YNEEDLQWPR DLPYGSAVDT ESQPPPSDVA
101: AGGGRRKRRR TRSSKNKEEI ENQRMTHIAV ERNRRKQMNE YLAVLRSLMP PYYAQRGDQA SIVGGAINYL KELEHHLQSM EPPVKTATED TGAGHDQTKT
201: TSASSSGPFS DFFAFPQYSN RPTSAAAAEG MAEIEVTMVE SHASLKILAK KRPRQLLKLV SSIQSLRLTL LHLNVTTRDD SVLYSISVKV EEGSQLNTVE
301: DIAAAVNQIL RRIEEESSFS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)