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AT1G71900.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.943
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Protein of unknown function (DUF803)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF803); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF803 (InterPro:IPR008521); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF803) (TAIR:AT1G34470.1); Has 1265 Blast hits to 1244 proteins in 219 species: Archae - 0; Bacteria - 92; Metazoa - 420; Fungi - 372; Plants - 263; Viruses - 0; Other Eukaryotes - 118 (source: NCBI BLink).
Protein Annotations
BioGrid:28741eggNOG:ENOG410XNR8eggNOG:KOG2922EMBL:AC021665
EMBL:AY046035EMBL:AY079390EMBL:CP002684EnsemblPlants:AT1G71900
EnsemblPlants:AT1G71900.1entrez:843521GeneID:843521Genevisible:Q94AH3
GO:GO:0005769GO:GO:0005886GO:GO:0015095GO:GO:0015693
GO:GO:0016021Gramene:AT1G71900.1hmmpanther:PTHR12570hmmpanther:PTHR12570:SF21
HOGENOM:HOG000203962InParanoid:Q94AH3InterPro:IPR008521KEGG:ath:AT1G71900
OMA:TWIFTLVPANTHER:PTHR12570PaxDb:Q94AH3Pfam:PF05653
Pfam:Q94AH3PhylomeDB:Q94AH3PIR:G96741PRIDE:Q94AH3
PRO:PR:Q94AH3ProteinModelPortal:Q94AH3Proteomes:UP000006548RefSeq:NP_565027.1
SUPFAM:0043518TAIR:AT1G71900TMHMM:TMhelixUniGene:At.22625
UniProt:Q94AH3
Coordinates (TAIR10) chr1:+:27061754..27064053
Molecular Weight (calculated) 37475.40 Da
IEP (calculated) 8.66
GRAVY (calculated) 0.61
Length 343 amino acids
Sequence (TAIR10)
(BLAST)
001: MAESSGSWRD SYKGMSSDNI KGLVLALSSS LFIGASFIVK KKGLKKAAST GTRAGVGGYS YLYEPLWWIG MTTMLLGEIA NFAAYAFAPA ILVTPLGAVS
101: IIISAVLAHI ILREKLHIFG ILGCALCVVG STTIVLHAPQ EREIDSVIEV WNLATEPAFM FYASLVIGAA VFLIIRFVPQ YGQTNVMVYI GICSLVGSLS
201: VMSVKALGIA LKLTFSGTNQ LFYPQTWIFT LVVLTCVVTQ LNYLNKALDT FNTAIVSPIY YVMFTSLTIL ASVIMFKDWD RQNGTQIVTE ICGFVTILSG
301: TFLLHRTKDM VEGSSVILPL RISKHINEEE GIPLRRQESL RSP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)