AT1G70770.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function DUF2359, transmembrane | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function DUF2359, transmembrane; FUNCTIONS IN: molecular_function unknown; LOCATED IN: endoplasmic reticulum, nucleus, plasma membrane, membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2359, transmembrane (InterPro:IPR019308); BEST Arabidopsis thaliana protein match is: Protein of unknown function DUF2359, transmembrane (TAIR:AT1G23170.2); Has 190 Blast hits to 170 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 76; Fungi - 3; Plants - 111; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:26688622..26691185 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 66868.10 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.34 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.32 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 610 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDPIESVEYN GFETSNGNVD HGWKKVVYPK RHRKQKQADQ ATANGGKTVA SNGTVANGGD NVFRSLEEQA EDRRRRILAA KMTAIDSDDD GVVRSKHRSN 101: GYGDDGYDFD GSDDEIATLK VEEVKKPKPK KEKKPKVSLP EAASKIDPLN LEAFLVEASE SYASQPEIQL MRFADYFGRA LSGVSSVQFP WVKMFKESPL 201: SKLIEVPLAH IPEPVYKTSV DWINHRPIEA LGAFVLWAFD CILTDLAAQQ GGAKGGKKGG QQTTSKSQVA IFVALAMVLR RKPDALTNVL PTLRENPKYQ 301: GQDKLPVTVW MMAQASQGDI AVGLYSWAHN LLPVVGNKNC NPQSRDLILQ LVEKILTNPK ARTILVNGAV RKGERLIPPP SFEILLRLTF PASSARVKAT 401: ERFEAIYPLL KEVALAGAPG SKAMKQVTQQ IFTFALKLAG EGNPVLAKEA TAIAIWSVTQ NFDCCKHWDN LYKENLEASV AVLKKLVEEW KEHSVKLSSS 501: PNDALTLNRT MKSFRLKNEE VITEGGANAS LYKEADKSCK TISGRLSRGS GCLKGTAITL VFLAAAGAAA AAVLSSNPEV TNELKNLVDS LELHEYINKY 601: TEVISTALKK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)