AT1G70650.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.989 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Ran BP2/NZF zinc finger-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Ran BP2/NZF zinc finger-like superfamily protein; FUNCTIONS IN: binding, zinc ion binding, small conjugating protein ligase activity; INVOLVED IN: regulation of protein metabolic process, post-translational protein modification; LOCATED IN: mitochondrion, intracellular; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608), Zinc finger, RanBP2-type (InterPro:IPR001876); BEST Arabidopsis thaliana protein match is: MMS ZWEI homologue 2 (TAIR:AT1G70660.1). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:26638158..26641949 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 68314.30 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.08 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.76 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 595 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLRFFKTDHR LFHRIIGYTR PFHGLAKTQN AEIARPGLVD PSSHPWPEWL DLMGMLAKKG YFEESLIPLM SSKESNHIRT ACLNFARHRF TLVRNLSKKD 101: IKVIAGCGCP STDRKVVNSG KRLRAYVGID EGNVCGSCNL RGKCERAYAQ ARDDEGARTI DVMRLLLTYG LDSISPTVEN RACQTKLVED SVRKLLRESV 201: AYSLTDFESA ETETAGDELQ PNSQDIDERD PRKRPGDWYC TECKFLNFAK NIRCLRCDVF SEERLKQLKE EQKDHLPLKK GDWICQTCNF LNFSKNTRCL 301: RCKDKPTLRQ INPGEWECES CNYINFRRNS ICLKCDHKRQ KAANVTPDSK TVADRQSGVT KTWSFVEEES VKRCNGEEEE EEDGFMGFPV EGGRSNVSKS 401: AEKREQWKLE MTQRIRSNGT KAKKDDNTKN ETESKCYDRR RNELLVPRNF RLLEELERGE KGIGDGTVSY GMDDADDILM QSWTGTILGP HNTAYEGKIF 501: QLKLFCGKDY PESPPTVRFQ SRINMACVNP ENGVVDPSHF PMLSNWRREF TMEDLLIQLK KEMMSSQNRK LAQPLEGNEE GRTDPKGLVV KCCVM |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)