AT1G70480.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.989 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Domain of unknown function (DUF220) | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Domain of unknown function (DUF220); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF220 (InterPro:IPR003863); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF220) (TAIR:AT1G23560.1); Has 170 Blast hits to 157 proteins in 17 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 157; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:26562304..26563608 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 36340.60 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 9.94 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.57 | ||||||||||||||||||||||||||||
| Length | 320 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGNPGSDTER NKGNVVSSVF DPALSRFVGF SQKLQTRLKS QLKNLTDDKH GIGSSWRQDK GNSSISMQID LEKQLDCWRE NPSWTDQIPV VKVGIPKGSL 101: CNLKAEVNVG LPPDAVYNIV IDPDNRRVFK NIKEVMSRKV LVDDGLRQVV EVEQAALWRF LWWSGTISVH VLVDQDRADH SMKFKQVKSG FMKRFEGSWQ 201: VKPLFVDEHM CDRLKPKTLE EYNRCTGGKG RIGSKVTLDQ LIQPAIVPPP PISWYLRGIT AKTTEMLIHD LLAETARIRA AGVMEDGHSP DEQRIGTPGD 301: IKERWSAHRR TSRRRRNDLC |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)