AT1G70290.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.893 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : trehalose-6-phosphatase synthase S8 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes an enzyme putatively involved in trehalose biosynthesis. Though the protein has both trehalose-6-phosphate synthase (TPS)-like and trehalose-6-phosphate phosphatase (TPP)-like domains, neither activity has been detected in enzymatic assays nor has the protein been able to complement yeast TPS or TPP mutants. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
trehalose-6-phosphatase synthase S8 (TPS8); FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: trehalose biosynthetic process, metabolic process; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HAD-superfamily hydrolase, subfamily IIB (InterPro:IPR006379), Glycosyl transferase, family 20 (InterPro:IPR001830), Trehalose-phosphatase (InterPro:IPR003337); BEST Arabidopsis thaliana protein match is: trehalose-phosphatase/synthase 9 (TAIR:AT1G23870.1); Has 4767 Blast hits to 4700 proteins in 1027 species: Archae - 58; Bacteria - 2753; Metazoa - 215; Fungi - 657; Plants - 620; Viruses - 0; Other Eukaryotes - 464 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:-:26471286..26474078 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 97566.40 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.73 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.29 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 856 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVSRSCANFL DLSSWDLLDF PQTPRTLPRV MTVPGIITDV DGDTTSEVTS TSGGSRERKI IVANMLPLQS KRDAETGKWC FNWDEDSLQL QLRDGFSSET 101: EFLYVGSLNV DIETNEQEEV SQKLLEEFNC VATFLSQELQ EMFYLGFCKH QLWPLFHYML PMFPDHGDRF DRRLWQAYVS ANKIFSDRVM EVINPEDDYV 201: WIQDYHLMVL PTFLRKRFNR IKLGFFLHSP FPSSEIYRTL PVRDEILRGL LNCDLIGFHT FDYARHFLSC CSRMLGLDYE SKRGHIGLDY FGRTVYIKIL 301: PVGVHMGRLE SVLSLDSTAA KTKEIQEQFK GKKLVLGIDD MDIFKGISLK LIAMEHLFET YWHLKGKVVL VQIVNPARSS GKDVEEAKRE TYETARRINE 401: RYGTSDYKPI VLIDRLVPRS EKTAYYAAAD CCLVNAVRDG MNLVPYKYIV CRQGTRSNKA VVDSSPRTST LVVSEFIGCS PSLSGAIRVN PWDVDAVAEA 501: VNSALKMSET EKQLRHEKHY HYISTHDVGY WAKSFMQDLE RACRDHYSKR CWGIGFGLGF RVLSLSPSFR KLSVEHIVPV YRKTQRRAIF LDYDGTLVPE 601: SSIVQDPSNE VVSVLKALCE DPNNTVFIVS GRGRESLSNW LSPCENLGIA AEHGYFIRWK SKDEWETCYS PTDTEWRSMV EPVMRSYMEA TDGTSIEFKE 701: SALVWHHQDA DPDFGSCQAK EMLDHLESVL ANEPVVVKRG QHIVEVKPQG VSKGLAAEKV IREMVERGEP PEMVMCIGDD RSDEDMFESI LSTVTNPELL 801: VQPEVFACTV GRKPSKAKYF LDDEADVLKL LRGLGDSSSS LKPSSSHTQV AFESIV |
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)