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AT1G69710.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.891
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain; FUNCTIONS IN: chromatin binding, zinc ion binding, Ran GTPase binding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, FYVE-type (InterPro:IPR000306), Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Zinc finger, FYVE-related (InterPro:IPR017455), Regulator of chromosome condensation, RCC1 (InterPro:IPR000408), Pleckstrin homology-type (InterPro:IPR011993), Disease resistance/zinc finger/chromosome condensation-like region (InterPro:IPR013591), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (TAIR:AT5G19420.1); Has 25088 Blast hits to 10396 proteins in 690 species: Archae - 87; Bacteria - 2712; Metazoa - 10178; Fungi - 1575; Plants - 3087; Viruses - 5; Other Eukaryotes - 7444 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5184eggNOG:ENOG410JNJTEMBL:CP002684EnsemblPlants:AT1G69710
EnsemblPlants:AT1G69710.1entrez:843307Gene3D:2.130.10.30Gene3D:2.30.29.30
Gene3D:3.30.40.10GeneID:843307GO:GO:0046872Gramene:AT1G69710.1
hmmpanther:PTHR22870hmmpanther:PTHR22870:SF205InParanoid:F4I287InterPro:IPR000306
InterPro:IPR000408InterPro:IPR009091InterPro:IPR011011InterPro:IPR011993
InterPro:IPR013083InterPro:IPR013591InterPro:IPR017455InterPro:IPR027988
iPTMnet:F4I287KEGG:ath:AT1G69710ncoils:CoilOMA:DAQNIAC
PaxDb:F4I287Pfam:PF00415Pfam:PF01363Pfam:PF08381
Pfam:PF13540Pfam:PF13713Pfscan:PS50012Pfscan:PS50178
Pfscan:PS51514PRIDE:F4I287PRINTS:PR00633PROSITE:PS00626
PROSITE:PS50012PROSITE:PS50178PROSITE:PS51514ProteinModelPortal:F4I287
Proteomes:UP000006548RefSeq:NP_177129.2scanprosite:PS00626SMART:SM00064
SMR:F4I287STRING:3702.AT1G69710.1SUPFAM:SSF50729SUPFAM:SSF50985
SUPFAM:SSF57903TAIR:AT1G69710UniGene:At.52453UniProt:F4I287
Coordinates (TAIR10) chr1:+:26222325..26226530
Molecular Weight (calculated) 114149.00 Da
IEP (calculated) 8.60
GRAVY (calculated) -0.49
Length 1041 amino acids
Sequence (TAIR10)
(BLAST)
0001: MCILELRLFA AASMADSLRT SFSERDVEQA ITSLKKGSYL LKYGRRGKPK FCPFQLTSDE SALVWYSGKE EKQIKLSQVL RIVPGQRTPT FKRYPRPEKE
0101: YQSFSLICPD RSLDLICKDK DEAEVWVVGL KSLITRVKVS KWKTTIKPEI TSAECPTPHA RRVSPFVTIL DQVIQPSNET STQTRLGKVF SDIVAITAPP
0201: SNNNQTEASG NLFCPFSPTP ANVENSNLRF STNDPFRLSL SSAVSTSSHG SYHEDFDALG DVFVWGESIS DGVLSGTGNS LNSTTEDALL PKALESTIVL
0301: DAQNIACGKC HAVLVTKQGE IFSWGEGKGG KLGHGLETDA QKPKFISSVR GLGFKSLACG DFHTCAITQS GDLYSWGDGT HNVDLLGHGN ESSCWIPKRV
0401: TGDLQGLYVS DVACGPWHTA VVASSGQLFT FGDGTFGALG HGDRRSTSVP REVESLIGLI VTKVACGVWH TAAVVEVTNE ASEAEVDSSR GQVFTWGDGE
0501: KGQLGHGDND TKLLPECVIS LTNENICQVA CGHSLTVSRT SRGHVYTMGS TAYGQLGNPT AKGNFPERVE GDIVEASVEE IACGSYHVAV LTSKSEIYTW
0601: GKGLNGQLGH GNVENKREPA VVGFLREKQV KAITCGSNFT AVICVHKWVP GSEHSLCAGC RNPFNFRRKR HNCYNCGLVF CKVCSSRKSL RAALAPDMNK
0701: PYRVCYGCFT KLKKSRESSP STPTSRTRKL LNMRKSTDVS ERDSLTQKFL SVNARLSSAD SSLHYSERRH HRRDLKPEVN NSNVFPSMNG SLQPVGSPFS
0801: KGSTALPKIP KNMMVKIPGS GMSSRTTSPV SVKSTSPRRS YEVAAAESKQ LKDSFNQDMA GLKEQVEQLA SKAHQLEEEL EKTKRQLKVV TAMAADEAEE
0901: NRSAKEVIRS LTTQLKEMAE KQSQKDSIST NSKHTDKEKS ETVTQTSNQT HIRSMVSQDS QNENNLTSKS FANGHRKQND KPEKVVQDEP GVYLTLLSLP
1001: GGGTELKRVR FSRKQFTEEQ AEKWWGENGA KVCERHNILV S
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)