AT1G69350.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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| FP Images |
Arabidopsis cell culture (mitochondrial marker)
Arabidopsis cell culture (plastidal marker)
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G18750.1); Has 50942 Blast hits to 14152 proteins in 270 species: Archae - 0; Bacteria - 36; Metazoa - 125; Fungi - 175; Plants - 49809; Viruses - 0; Other Eukaryotes - 797 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:26069882..26072245 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 87495.30 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.35 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.01 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 787 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTQYMPLFRS CSSLRLVSQL HAHLLVTGRL RRDPLPVTKL IESYAFMGSP DSSRLVFEAF PYPDSFMYGV LIKCNVWCHL LDAAIDLYHR LVSETTQISK 101: FVFPSVLRAC AGSREHLSVG GKVHGRIIKG GVDDDAVIET SLLCMYGQTG NLSDAEKVFD GMPVRDLVAW STLVSSCLEN GEVVKALRMF KCMVDDGVEP 201: DAVTMISVVE GCAELGCLRI ARSVHGQITR KMFDLDETLC NSLLTMYSKC GDLLSSERIF EKIAKKNAVS WTAMISSYNR GEFSEKALRS FSEMIKSGIE 301: PNLVTLYSVL SSCGLIGLIR EGKSVHGFAV RRELDPNYES LSLALVELYA ECGKLSDCET VLRVVSDRNI VAWNSLISLY AHRGMVIQAL GLFRQMVTQR 401: IKPDAFTLAS SISACENAGL VPLGKQIHGH VIRTDVSDEF VQNSLIDMYS KSGSVDSAST VFNQIKHRSV VTWNSMLCGF SQNGNSVEAI SLFDYMYHSY 501: LEMNEVTFLA VIQACSSIGS LEKGKWVHHK LIISGLKDLF TDTALIDMYA KCGDLNAAET VFRAMSSRSI VSWSSMINAY GMHGRIGSAI STFNQMVESG 601: TKPNEVVFMN VLSACGHSGS VEEGKYYFNL MKSFGVSPNS EHFACFIDLL SRSGDLKEAY RTIKEMPFLA DASVWGSLVN GCRIHQKMDI IKAIKNDLSD 701: IVTDDTGYYT LLSNIYAEEG EWEEFRRLRS AMKSSNLKKV PGYSAIEIDQ KVFRFGAGEE NRIQTDEIYR FLGNLQNLTN EEHVVDS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)