AT1G69220.2
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 0.976 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Protein kinase superfamily protein | ||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
Encodes a putative serine/threonine kinase (SIK1). | ||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
SIK1; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: mitochondrion, chromosome, centromeric region, chromosome, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G53165.2); Has 135073 Blast hits to 131353 proteins in 4820 species: Archae - 174; Bacteria - 17099; Metazoa - 50056; Fungi - 12728; Plants - 33057; Viruses - 559; Other Eukaryotes - 21400 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:-:26020298..26026119 | ||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 89739.20 Da | ||||||||||||||||||||||||||||||||||||
IEP (calculated) | 4.93 | ||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.75 | ||||||||||||||||||||||||||||||||||||
Length | 809 amino acids | ||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MDHNSPKSRR SRKPEPKPDI YSTFVVHSDS DSDQGRDRDK RKAKPEEDEN VDLYATMVYK GDSDGEGEED DDDDSMLPPL LKRLPKDFGG GASLDYDDDD 101: GDESGDFGTM IVKTDRSSHS KKNSPYSSKP RMGVSPRRRA RGGDEESSDE EDEEEDDDDD DGDYGTFVVK SKDKKGKKKD KEIDMTTMGR AVASMQKSNF 201: GGKTRKLDPS SSSSKLHGED NRKMQQQNRK GSYGSVYKAR DLKTSEIVAV KVISLTEGEE GYEEIRGEIE MLQQCNHPNV VRYLGSYQGE DYLWIVMEYC 301: GGGSVADLMN VTEEALEEYQ IAYICREALK GLAYLHSIYK VHRDIKGGNI LLTEQGEVKL GDFGVAAQLT RTMSKRNTFI GTPHWMAPEV IQENRYDGKV 401: DVWALGVSAI EMAEGLPPRS SVHPMRVLFM ISIEPAPMLE DKEKWSLVFH DFVAKCLTKE PRLRPTAAEM LKHKFVERCK TGASAMSPKI EKSRQIRATM 501: ALQAQSVVAP SLEDTSTLGP KSSEELGITV PSKPPQNSTE APLTSTLNRQ HITGNTVLAG EGGDFGTMIV HGEDETEESD SRSQLVREKE SSSSQFEGVP 601: REFPGEELPD SWIHDKKKPP AIDLPVEASI SQSMQASSSH EHRTKLHNIA GTQMEGGSDA SGSTLKNETV GRKAFALQDK LWSIYAAGNT VPIPFLRATD 701: ISPIALLSEN MIGGMQQDGN GTVAVEALQE LFTSSDPQSK KGRRGQNEMP LPPSVYQRLT TSSSLMNLAQ VLAYHRACYE EMPLQELQAT QEQQTIQNLC 801: DTLRTILRL |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)