suba logo
AT1G69170.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: squamosa promoter binding protein-like 14 (TAIR:AT1G20980.1); Has 836 Blast hits to 835 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 834; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:28469eggNOG:ENOG410IVJAeggNOG:ENOG41120ICEMBL:AC008262
EMBL:AC018364EMBL:AF370612EMBL:AJ011643EMBL:AJ011644
EMBL:AK227964EMBL:BT006436EMBL:CP002684EnsemblPlants:AT1G69170
EnsemblPlants:AT1G69170.1entrez:843248Gene3D:4.10.1100.10GeneID:843248
Genevisible:Q94JW8GO:GO:0003677GO:GO:0003700GO:GO:0005634
GO:GO:0006351GO:GO:0006355GO:GO:0010468GO:GO:0042742
GO:GO:0046872Gramene:AT1G69170.1hmmpanther:PTHR31251hmmpanther:PTHR31251:SF22
HOGENOM:HOG000154391InParanoid:Q94JW8IntAct:Q94JW8InterPro:IPR004333
KEGG:ath:AT1G69170OMA:EYNELYFPaxDb:Q94JW8Pfam:PF03110
Pfam:Q94JW8Pfscan:PS51141PhylomeDB:Q94JW8PIR:T52592
PRIDE:Q94JW8PRO:PR:Q94JW8PROSITE:PS51141ProteinModelPortal:Q94JW8
Proteomes:UP000006548RefSeq:NP_177077.3SMR:Q94JW8STRING:3702.AT1G69170.1
SUPFAM:SSF103612TAIR:AT1G69170UniGene:At.500UniProt:Q94JW8
Coordinates (TAIR10) chr1:+:26005626..26007041
Molecular Weight (calculated) 45955.20 Da
IEP (calculated) 7.74
GRAVY (calculated) -0.79
Length 405 amino acids
Sequence (TAIR10)
(BLAST)
001: MDSWSYGRSV FMSNETLLPC DTFAKNRRFE QRLSNNDDVL ISDMAGNSNG FSAVSITKVV PEEEDEENIS SSSKFSSQEL NRIDFKLRSF LDLGNDDDDT
101: SSRGFALPSK KSRASNLCSQ NPLCQVYGCS KDLSSSKDYH KRHRVCEAHS KTSVVIVNGL EQRFCQQCSR FHFLSEFDDG KRSCRRRLAG HNERRRKPAF
201: YFLPGKRHKL LRTSQDVVGN KFLENSSLVL PESFPGSLLY RVIDEDDHRT SRLVSFKDEP TCSMFPTNEQ NSSRTYESKP AIYSTEVSSI WDLHETAASR
301: STRALSLLSA QSQQHLSKFP NTTFSITQPN QNLNHSSSTD YHQMEQPLWI DPGKTNSAGS SSCKGKGTST VDLLQLSSHL QRIEQQRNYT GDVKQEYNEL
401: YFPGS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)