AT1G68990.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : male gametophyte defective 3 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
MGP3 (male gametophyte-defective 3) belongs to a small family of nuclear-encoded Phage type RNA polymerases (RPOTs) involved in the transcription of mitochondrial genes in Arabidopsis thaliana. Mutation in MGP 3 significantly retarded pollen tube growth and caused defective embryo development. | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
male gametophyte defective 3 (MGP3); FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding; INVOLVED IN: pollen tube growth, transcription, ovule development, embryo development ending in seed dormancy; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase, bacteriophage type (InterPro:IPR002092); BEST Arabidopsis thaliana protein match is: DNA/RNA polymerases superfamily protein (TAIR:AT5G15700.1). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:25935499..25940755 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 111769.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.22 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.46 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 983 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MWRNILGRAS LRKVKFLSDS SSSGTHYPVN RVRGILSSVN LSGVRNGLSI NPVNEMGGLS SFRHGQCYVF EGYATAAQAI DSTDPEDESS GSDEVNELIT 101: EMEKETERIR KKARLAAIPP KRVIAGMGAQ KFYMLKQRQV KMETEEWERA ARECREILAD MCEQKLAPNL PYMKSLFLGW FEPVRNAIQD DLDTFKIKKG 201: KIPYAPFMEQ LPADKMAVIT MHKMMGLLMT NAEGVGIVKL VNAATQIGEA VEQEVRINSF LQKKNKKNAT DKTINTEAEN VSEEIVAKET EKARKQVTVL 301: MEKNKLRQVK ALVRKHDSFK PWGQEAQVKV GARLIQLLME NAYIQPPAEQ FDDGPPDIRP AFKQNFRTVT LENTKTSRRY GCIECDPLVL KGLDKSVSRI 401: VDYARHMVIP YLPMLIPPQN WTGYDQGAHF FLPSYVMRTH GAKQQRTVMK RTPKEQLEPV YEALDTLGNT KWKINKKVLS LVDRIWANGG RIGGLVDRED 501: VPIPEEPERE DQEKFKNWRW ESKKAIKQNN ERHSQRCDIE LKLEVARKMK DEEGFYYPHN VDFRGRAYPI HPYLNHLGSD LCRGILEFCE GKPLGKSGLR 601: WLKIHIANLY AGGVDKLAYE DRIAFTESHL EDIFDSSDRP LEGKRWWLNA EDPFQCLAAC INLSEALRSP FPEAAISHIP IHQDGSCNGL QHYAALGRDK 701: LGADAVNLVT GEKPADVYTE IAARVLKIMQ QDAEEDPETF PNATYAKLML DQVDRKLVKQ TVMTSVYGVT YSGARDQIKK RLKERGTFED DSLTFHASCY 801: AAKITLKALE EMFEAARAIK SWFGDCAKII ASENNAVCWT TPLGLPVVQP YRKPGRHLVK TTLQVLTLSR ETDKVMARRQ MTAFAPNFIH SLDGSHMMMT 901: AVACNRAGLS FAGVHDSFWT HACDVDVMNT ILREKFVELY EKPILENLLE SFQKSFPDIS FPPLPERGDF DLRKVLESTY FFN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)