AT1G68940.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.960 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Armadillo/beta-catenin-like repeat family protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Armadillo/beta-catenin-like repeat family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: senescence-associated E3 ubiquitin ligase 1 (TAIR:AT1G20780.1); Has 1977 Blast hits to 1849 proteins in 171 species: Archae - 0; Bacteria - 125; Metazoa - 104; Fungi - 38; Plants - 1549; Viruses - 3; Other Eukaryotes - 158 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:25922001..25925374 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 114853.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.19 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.23 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1033 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MEIQTAESNV ICSIDIFESL SDSVDVAKKL VEKSQESNEA ESTTDLRSIE AGFEGVVKQM GETLQSIPES TFDEEEYIGV VIQSLSNEMQ NATIGDGSKS 0101: EMINNGQQKI SAKHTPDIVS EQMEEDLYPT DPEFSYESYM MYSESQSQMT DIPDIPSKST DVSRQRKHGN HSESQSLVTE IPDIPSQSTN VSSQRKHGNL 0201: SKSQSQSTEI PDIPSQSSNA SSQRKYGNLS ESLSMLPQVT QFMEPPYQAF ICPLTKEIME DPVTTETGVT CERQAVIEWF DSFGNSDEIN CPVTGQKLTT 0301: ELSANVVLKT IIQEWKVRNE AARIKVAHAA LSLGGSESMV IDALRDLQMT CEGKEYNKVQ VREAGIIQLL DRYLTYRSKD VRFELLKFLR TLADEETDDG 0401: KEMIVKTITM SCVIKLLGSS HQPVRHAAQA LLLELSKSQH ACEKIGTARG AILMLVTAKY NRELDSFASE TSDQILRNLE KCPENIKQMA ESGLLEPLLG 0501: HLAEGSEETQ VAMAAYLVEI DIGHEKKTYV AEKACPALIG LVQSENIDAR RAAFKALAHI SLYHPNNKIL VEVGIIKIMV EEMFTKRVFS DLMNSRNEAA 0601: TILANILESG LEHETFEVNT HGHTLGSDYF VYNIIHMLKN SSPDDLNIDL IRILLSLSKS PRAMATIVSV IKETDASFAM IELINNPHDE LGVGALKLLI 0701: ALTPYIGHTL SERLCKTRGQ PENLIQCPVE ANQITEKHAV SAKLLAKLPH QNLTLNLALV NESIVSEILH AIHLIQRSGA RTSRYATDFL EGLVGILVRF 0801: TTTLYEPQMM YLARNHDLTS VFVDLLMKTS SDEVQRLSAT GLENLSSTTM TLSRPPQPRS TKFMGSLSMP RSFSLRSSKK KQIEICAIHR GVCSAKNTFC 0901: LVEANAITKL LACLQSDKVE VVESALAAIC TLLDDKVEVE KSLSMLSEMN AVQLILNAVK EHKKESLLQK AFWMIDKFII RGGDKYASEI SQDRMLSGML 1001: VSAFHRGDGN TRQMAENILR RLDKMPSFST YIT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)