AT1G68725.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 ASURE: extracellular What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : arabinogalactan protein 19 | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
AGP19 is a lysine-rich arabinogalactan-protein (AGP) and part of a multi-gene family of glycoproteins with approx. 50 members. It falls into one subclass with AGP17 and AGP18, other lysine-rich AGPs. It is expressed in young leaves, shoots, roots and flowers. Non-consensus splice site at the intron:exon boundary (AT:exon) | ||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
arabinogalactan protein 19 (AGP19); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:25809298..25810130 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 24485.30 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 11.46 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.27 | ||||||||||||||||||||||||||||
| Length | 248 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MESNSIIWSL LLASALISSF SVNAQGPAAS PVTSTTTAPP PTTAAPPTTA APPPTTTTPP VSAAQPPASP VTPPPAVTPT SPPAPKVAPV ISPATPPPQP 101: PQSPPASAPT VSPPPVSPPP APTSPPPTPA SPPPAPASPP PAPASPPPAP VSPPPVQAPS PISLPPAPAP APTKHKRKHK HKRHHHAPAP APIPPSPPSP 201: PVLTDPQDTA PAPSPNTNGG NALNQLKGRA VMWLNTGLVI LFLLAMTA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)