AT1G68210.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : pseudo-response regulator 6 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Similar to ARR response regulator proteins that function in two-component signal transduction but lacking a conserved D-D-K motif in the receiver domain | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
pseudo-response regulator 6 (APRR6); FUNCTIONS IN: two-component response regulator activity, transcription regulator activity; INVOLVED IN: regulation of transcription, DNA-dependent, two-component signal transduction system (phosphorelay), regulation of transcription; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: CheY-like (InterPro:IPR011006), Homeodomain-like (InterPro:IPR009057), Signal transduction response regulator, receiver domain (InterPro:IPR001789), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: response regulator 2 (TAIR:AT4G16110.1); Has 1791 Blast hits to 1778 proteins in 154 species: Archae - 0; Bacteria - 186; Metazoa - 1; Fungi - 2; Plants - 1541; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:25565983..25569302 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 86186.40 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.47 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.52 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 755 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAGCLVPECA DDISILLIDH DTASIASLTS MLQQFSKRVM SVDVASKALS MIEKQKKEIG LIIANIEMPH IDSHSFLNAL LLKDIPLILI NPEIKTKEPS 101: DLLTKRACFS LDKPISNDDI KNMWQHVFSK KSQELKKINI TEDQENVMDK DTYQIEAFRA NLKRQRISQA SLLGRRPFID TFSTYETFQK RKSIANVEWK 201: TTPSYAIEIE NKRKEWKKSV GRRKSLWNSE RHMKFIAAIS ILGEEDFRPK SILEIMNDPN LTHRQVGSHL QKYKAQIDQI SYTLPRNESR SIDKTFEYPS 301: NYKYPFKISD LTNNLIVSNS LWNSLEKKNS ASASITQFLF KKPIGEKEET MPKFHIGGKL DLSNHSVHGN VLNKLSMNVN FVPSTISNNP AYNILSIDSS 401: SIDSSSYTGL VSTGLSSENS PILYGLPSND GASNTCTSQM ESERISIPQY DPNQCHPHRS ILETDVNQID LDFTSILDSF DPLVDECLMK ENNRFLPNPT 501: MNLLDTDIDK MDWVSFIENL SHHDINMNHM DWDPSTANYV LPETNMNINF PEKHTNEIGW VSSQVGYVPF ENMIPSEVDI NHMGMGYSGG SIPPQEETNT 601: NNVGFVSCEI HSEIPPKTNM AILETNYSNP LDWVFPEDIT SLETNTIQKS LVSCETSYDA LDNMVPLETN MEEMNDALYD ISIEDLISFD IDANEKDIFS 701: WLEDNGFSEE NNMMESCEYH NIESVNQSDD MKIDDNFDDY RECMDWINEE MNKDV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)