AT1G68170.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.711 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : nodulin MtN21 /EamA-like transporter family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
nodulin MtN21 /EamA-like transporter family protein; LOCATED IN: membrane; EXPRESSED IN: embryo, leaf whorl, seed; EXPRESSED DURING: C globular stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 /EamA-like transporter family protein (TAIR:AT1G25270.1); Has 2511 Blast hits to 2498 proteins in 458 species: Archae - 10; Bacteria - 1084; Metazoa - 4; Fungi - 0; Plants - 1225; Viruses - 0; Other Eukaryotes - 188 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:25551925..25554258 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 38799.70 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.47 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.79 | ||||||||||||||||||||||||||||||||||||||||
| Length | 356 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKDITAMVVV QIATAGLNIF FKLAMEDGMN PSVLVAYRLL FATLFMIPIC FIFQRKKRPE FTCRLMLLAL LSGLLGVVIP SILTITGLAL TSATFTSAAG 101: VLTPLVTFIF AALLRMESVR LGSSVGLAKV FGTLFGVGGA LVFIFYRGIE IRLWSTHVNL VNQPRDSSRD ATTHHISILG ALLVFGGNIS ISLWFLLQVK 201: ISKQFGGPYW NATLMNMMGG VVAMLVALCW EHDLDEWRLG WNIRLLTIAY AAILISGMVV AVNAWCIESR GPLFVSVFSP VGLVIVALVG SFLLDETLHL 301: GSIIGTVIIV GALYIVLWAK NKEMKSMLTT SDHNETNKTS KDITVNNLPT LSTNVP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)