AT1G67950.4
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.999 What is SUBAcon? |
|
||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||
| Description (TAIR10) | protein_coding : RNA-binding (RRM/RBD/RNP motifs) family protein | ||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||
| Computational Description (TAIR10) |
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: oxidoreductase activity, nucleic acid binding; INVOLVED IN: oxidation reduction; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT4G17720.1); Has 252 Blast hits to 252 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 15; Plants - 228; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). | ||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||
| Coordinates (TAIR10) | chr1:-:25478884..25479778 | ||||||||||||||||||||
| Molecular Weight (calculated) | 23396.80 Da | ||||||||||||||||||||
| IEP (calculated) | 5.14 | ||||||||||||||||||||
| GRAVY (calculated) | -0.16 | ||||||||||||||||||||
| Length | 219 amino acids | ||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRSETQESQV AYVTFKDSQG AETAMLLTGA VIADLRVSIT PAVNYQLPPE ALALDSEHSF NGFSVKKAED VVNIMVGRGY ALGKDAMEKA KAFDDRHNLI 101: SNASATIASL DDKMGLSEKL SIGTTVVNEK LRDIDERYQV REITKSALAA AEETAISART ALMANPYVSS GASWFSNAFG AVTKAVKEKV ENGGEGRKEI 201: ITLDPSSPKV PAVVPVKLG |
||||||||||||||||||||
| See Also |
|
||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)