AT1G67760.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.935 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : TCP-1/cpn60 chaperonin family protein | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
TCP-1/cpn60 chaperonin family protein; FUNCTIONS IN: unfolded protein binding, ATP binding; INVOLVED IN: response to salt stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), T-complex protein 1, epsilon subunit (InterPro:IPR012718); BEST Arabidopsis thaliana protein match is: TCP-1/cpn60 chaperonin family protein (TAIR:AT1G24510.1); Has 1127 Blast hits to 982 proteins in 329 species: Archae - 446; Bacteria - 0; Metazoa - 192; Fungi - 185; Plants - 115; Viruses - 0; Other Eukaryotes - 189 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:25405814..25406272 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 13343.60 Da | ||||||||||||||||||||||||
| IEP (calculated) | 10.80 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.03 | ||||||||||||||||||||||||
| Length | 120 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MALAFDEFGR PFIILREQDQ KTRLKGIDAQ KANISAGKAV ARILRSSLGP KGMEKKCFKD LTEMSPYVSF FLLNLISLRS IPMALALNSG LQPIETLSAV 101: KSQQIKERRT FHSTGLIATM |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)