AT1G67455.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.998 What is SUBAcon? |
|||||||||
| Experimental Localisations and PPI |
|
||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||
| Description (TAIR10) | protein_coding : F-box and associated interaction domains-containing protein | ||||||||
| Curator Summary (TAIR10) |
|||||||||
| Computational Description (TAIR10) |
F-box and associated interaction domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 1 (InterPro:IPR006527); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT1G67450.1); Has 420 Blast hits to 363 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 420; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||
| Protein Annotations |
|
||||||||
| Coordinates (TAIR10) | chr1:+:25268145..25269475 | ||||||||
| Molecular Weight (calculated) | 24435.50 Da | ||||||||
| IEP (calculated) | 7.03 | ||||||||
| GRAVY (calculated) | -0.11 | ||||||||
| Length | 216 amino acids | ||||||||
| Sequence (TAIR10) (BLAST) |
001: MMISDLPEDM VEEILSRVSI ISLGALRWND LSKARVICKA EARQQFAGFM IKGSKEVSNT RLVVWNPYLG KIWSIQHRSA YHSENRYTLG YDNNRKPQNL 101: EEQLAVLLHN WGAFAMEIWV TTNIEPNAKK HAVIFDSSLS CGSVACIIGE TGNLRTVDLG VAAVPYRQLP VCSYAPSLEQ INQGQELPLI GLTQIFMEQH 201: KYWVSTFLDN LITKYG |
||||||||
| See Also |
|
||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)