AT1G66730.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.996 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : DNA LIGASE 6 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a novel plant specific DNA ligase that is involved in seed germination and DNA repair. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
DNA LIGASE 6 (LIG6); FUNCTIONS IN: DNA binding, DNA ligase (ATP) activity, ATP binding; INVOLVED IN: DNA repair, seed germination, DNA recombination, DNA replication; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), DNA ligase, N-terminal (InterPro:IPR012308), DNA repair metallo-beta-lactamase (InterPro:IPR011084), ATP dependent DNA ligase, central (InterPro:IPR012310), ATP dependent DNA ligase, C-terminal (InterPro:IPR012309), ATP-dependent DNA ligase (InterPro:IPR000977), ATP-dependent DNA ligase, conserved site (InterPro:IPR016059); BEST Arabidopsis thaliana protein match is: DNA ligase 1 (TAIR:AT1G08130.1); Has 4468 Blast hits to 4373 proteins in 907 species: Archae - 366; Bacteria - 1648; Metazoa - 644; Fungi - 681; Plants - 268; Viruses - 157; Other Eukaryotes - 704 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:24884991..24891823 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 156330.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.26 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.32 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1396 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MASDSAGATI SGNFSNSDNS ETLNLNTTKL YSSAISSISP QFPSPKPTSS CPSIPNSKRI PNTNFIVDLF RLPHQSSSVA FFLSHFHSDH YSGLSSSWSK 0101: GIIYCSHKTA RLVAEILQVP SQFVFALPMN QMVKIDGSEV VLIEANHCPG AVQFLFKVKL ESSGFEKYVH TGDFRFCDEM RFDPFLNGFV GCDGVFLDTT 0201: YCNPKFVFPS QEESVGYVVS VIDKISEEKV LFLVATYVVG KEKILVEIAR RCKRKIVVDA RKMSMLSVLG CGEEGMFTED ENESDVHVVG WNVLGETWPY 0301: FRPNFVKMNE IMVEKGYDKV VGFVPTGWTY EVKRNKFAVR FKDSMEIHLV PYSEHSNYDE LREFIKFLKP KRVIPTVGVD IEKFDCKEVN KMQKHFSGLV 0401: DEMANKKDFL LGFYRQSYQK NEKSDVDVVS HSAEVYEEEE KNACEDGGEN VPSSRGPILH DTTPSSDSRL LIKLRDSLPA WVTEEQMLDL IKKHAGNPVD 0501: IVSNFYEYEA ELYKQASLPT PSLNNQAVLF DDDVTDLQPN PVKGICPDVQ AIQKGFDLPR KMNLTKGTIS PGKRGKSSGS KSNKKAKKDP KSKPVGPGQP 0601: TLFKFFNKVL DGGSNSVSVG SETEECNTDK KMVHIDASEA YKEVTDQFID IVNGSESLRD YAASIIDEAK GDISRALNIY YSKPREIPGD HAGERGLSSK 0701: TIQYPKCSEA CSSQEDKKAS ENSGHAVNIC VQTSAEESVD KNYVSLPPEK YQPKEHACWR EGQPAPYIHL VRTFASVESE KGKIKAMSML CNMFRSLFAL 0801: SPEDVLPAVY LCTNKIAADH ENIELNIGGS LISSALEEAC GISRSTVRDM YNSLGDLGDV AQLCRQTQKL LVPPPPLLVR DVFSTLRKIS VQTGTGSTRL 0901: KKNLIVKLMR SCREKEIKFL VRTLARNLRI GAMLRTVLPA LGRAIVMNSF WNDHNKELSE SCFREKLEGV SAAVVEAYNI LPSLDVVVPS LMDKDIEFST 1001: STLSMVPGIP IKPMLAKIAK GVQEFFNLSQ EKAFTCEYKY DGQRAQIHKL LDGTVCIFSR NGDETTSRFP DLVDVIKQFS CPAAETFMLD AEVVATDRIN 1101: GNKLMSFQEL STRERGSKDA LITTESIKVE VCVFVFDIMF VNGEQLLALP LRERRRRLKE VFPETRPGYL EYAKEITVGA EEASLNNHDT LSRINAFLEE 1201: AFQSSCEGIM VKSLDVNAGY CPTKRSDSWL KVKRDYVDGL GDTLDLVPIG AWYGNGRKAG WYSPFLMACF NPETEEFQSV CRVMSGFSDA FYIEMKEFYS 1301: EDKILAKKPP YYRTGETPDM WFSAEVVWEI RGADFTVSPV HSASLGLVHP SRGISVRFPR FISKVTDRNP EECSTATDIA EMFHAQTRKM NITSQH |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)