AT1G66610.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.981 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : TRAF-like superfamily protein | ||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
TRAF-like superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: multicellular organismal development, ubiquitin-dependent protein catabolic process; LOCATED IN: nucleus; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Seven-in-absentia protein, sina (InterPro:IPR004162); BEST Arabidopsis thaliana protein match is: Protein with RING/U-box and TRAF-like domains (TAIR:AT1G66620.1). | ||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:24850221..24851450 | ||||||||||||
| Molecular Weight (calculated) | 25966.50 Da | ||||||||||||
| IEP (calculated) | 7.58 | ||||||||||||
| GRAVY (calculated) | -0.04 | ||||||||||||
| Length | 237 amino acids | ||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVKGTNAEQA LAREEASSSR PKRQRVPSIV EEEGENGGGD VVVRSGTLFE LDLLDCPICC NALTIPIFQC DKGHIACSSC CTNVSNKCPY CSLAIGNYRS 101: RIMERVVEAF IVRCPIVAGE ASSSRQKRLR VPSIDEENGE NGGRDVVVPS GTLSQLDLLD CPVCSKALKI SIFQCDNGHV ACSSCCIELR YKCPSCSLPI 201: GNYRCIIMEK VVKAIIVPCQ TPKWLHRDIL LWQRVSP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)