AT1G66450.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.917 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Cysteine/Histidine-rich C1 domain family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 leaf senescence stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT1G66440.1); Has 1494 Blast hits to 630 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 1487; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:24786200..24788302 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 80462.80 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 7.25 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.27 | ||||||||||||||||||||||||||||
| Length | 700 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRSLISLFSQ LISLINSMDL DSQPEPEPES GIIFFIYQLI SFGRSLSGSK PERQIILLVT EMISLISSTD PKQEPEPEVM SLTSKTLSSL YSLDPYSELQ 101: LLIAKTFSFV ELMDSDSDPE ADAERESERL ISLCPQFEVE LVQGKFRVAG KFEWRRREKG KCNPGNRKVL RLRKGAEITH FFCRNCIGEE HDVCDKAPLE 201: VKHPLHPRHS LQLVLWWVSN FQKRKCYCCD EELLWIFYFC SACDCGMNIA CVEKKPLLSI DHPEWHEHIL SLFPRQAPLP CSVCALPHSR STFYICSPCQ 301: FIVHQSCINL PSVIRISRHL HRISFIRSFD QGDWSCGVCR RKIYNDYGGY SCINDDCSYA AHSTCATQSN VWDGNELKGK PEEIDGEGVE PYVSKGNGII 401: QHFSHQQHYL SLDENTGRDN NENKLCQACI TPIYSGKFYS CMKCNFILHE ECANFSRKIH HPIHPHMLTL MTPTTDRINI ENSCSACPWL CTTGFFYECD 501: REGCRFILHV QCSKISEPLV HESHMHPLFL TSRPGERKHC DVCKKPRDTS TSETFNCNEC VFSLCFKCAA IPYKVRYKHD KHMLTLSYGN ETSMLTHWCE 601: VCEGKINPKY RFYRCDEYCC VTLHMECLLG LDLYMTPGLS LFHSGATDID VLPNNRMSRP ICKTCNKRCP FKVVFQCSGF KFCSRFCLLR GIWTGLTKIA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)