AT1G66170.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : RING/FYVE/PHD zinc finger superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
encodes a PHD-domain containing protein required for male meiosis. Gene is expressed in developing male meiocytes and protein is localized to the nucleus. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
MALE MEIOCYTE DEATH 1 (MMD1); FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: microsporogenesis, regulation of transcription, DNA-dependent, male meiosis; LOCATED IN: nucleus; EXPRESSED IN: sperm cell, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT2G01810.1); Has 932 Blast hits to 913 proteins in 159 species: Archae - 0; Bacteria - 0; Metazoa - 337; Fungi - 321; Plants - 250; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:-:24638793..24641222 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 80815.90 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.66 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.29 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 704 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MPVPIIETCR KRKRKPKVYN LQRFGEDGFP IQRNGAFRDQ IRVFLRDCAE IEDYDIRGMT VWCTLLSHET KSSLIPLYIV EENVKHSSEP YCDHCRCTGW 101: SNHFVSKRKY HFIIPIDTEW SLPLEDDAFD SQSHVLHGLI HCNGFGHLVC VNGMESGSKY LCGREIVDFW DRLCNSLGAR MITVEDLAKK RSVELRLLYG 201: VAYGHSWFGR WGYKFCCGSF GVTKNEYENA IEALGSLEID QIEFDFGELR QSKEINQVFR YYREMSEGHL KTFRDLLRFM LIIKSHASPQ KLLPVTPPLL 301: TDSPHQKRSS RLLLKKSDVA DNDKSPKYRN YSTVAANLGS RWPVRRLIFA AEVIVESLKE MKALKQNGMT RQDVRDSARL HIGDTGLLDY VLKSMNNVVV 401: GDVLVRRYVD PITRILHYTI QDLDDAVKAK EPKKKEAVVL EEITPLRILT PLKPGADVYG DLLLLYTNVL LNYPESELVR SATQAILDSK HFIKEWPIWD 501: NNDTVLQFLC RINPSLVDVR SEQTTELPPG ELVTVPLQAT VYDLKQAIEE TFRDTYCILS NFVVTEIDEV EEDMSLIGSC SALTVRGHGI DLESKLKCQG 601: GCDTWMVKCI CRARDDDGER MISCDVCEVW QHTRCCGIDD SDTLPPLFVC SNCCEEFAEQ QRKVLQPKYE FPSSENVFLL ESADDFFGDQ RCLGMIFPEE 701: NYLL |
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)