AT1G66090.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Disease resistance protein (TIR-NBS class) | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Disease resistance protein (TIR-NBS class); FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT1G56540.1); Has 7229 Blast hits to 7084 proteins in 242 species: Archae - 0; Bacteria - 86; Metazoa - 1; Fungi - 7; Plants - 7129; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:24602221..24604573 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 48026.60 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.55 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.21 | ||||||||||||||||||||||||||||||||||||||||
| Length | 429 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAASTSSSSS SSSSSLSSPS PCTWRYMTFT SFHGPDVRNT FLSHLRKQFN TNGITMFDDQ RMERSQTLAP TLTQAIRESK IYIVLLSKNY ASSSWCLDEL 101: LEILNCKEKR GQRVMTIFYG VNPSDVRKQT GEFGIAFNET CARKTEEERR KWSHALTCVG NITGVHVQDR DDEANMIEKI ATDVSEKLNA TESKDFDEMV 201: GIKAHLTKIE SLLSLDYDKV KIVGISGPAG IGKSTIARAL HNLLSSSFHL SCFMENLISQ SNPHSSLEYS SKLSLQEQLL SQVLNEKDIR IRHLGAIQER 301: LHDQRVLIIL DDVTSLEQLE VLANIKWYGP GSRIIVITKK KDILVQHGIC DIYHVGFPTD ADALKIFCLS AYRQTSPPDG SMKIHECEMF IKICGNLPLH 401: LHVLGSALRG RSYGRVQSLC NLVSLADFV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)