AT1G65990.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:cytosol 0.424 peroxisome 0.301 What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Description (TAIR10) | protein_coding : type 2 peroxiredoxin-related / thiol specific antioxidant / mal allergen family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Computational Description (TAIR10) |
type 2 peroxiredoxin-related / thiol specific antioxidant / mal allergen family protein; FUNCTIONS IN: oxidoreductase activity, antioxidant activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), Thioredoxin fold (InterPro:IPR012335), F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451), Redoxin (InterPro:IPR013740), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT4G10740.1); Has 5053 Blast hits to 4982 proteins in 889 species: Archae - 6; Bacteria - 1508; Metazoa - 173; Fungi - 295; Plants - 1465; Viruses - 0; Other Eukaryotes - 1606 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Coordinates (TAIR10) | chr1:-:24571603..24573471 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 62657.50 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 6.44 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.18 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 553 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MAPIDVGDFV PDGSISFFDD DDQLQTVSVH SLAAGKKVIL FGVPGAFPPT CSMNHVNGFI EKAEELKSNG VDEIICLSGD DPFMITACSE NKHVKFVEDG 101: SGEYIQLLGL ELEVKDKGLG VRSRGFALLL DNLKVIVVNV GSGGDCSLFQ LMKMTTTTMS NLPTDLLEEI ISRVPRKYMR AVRLTCKRWN GMFKSQSFTK 201: MHIGKEEAAT RELRQTRMIV MMDYNVYLMG IAVNEIPSIE TLGKLTCLDD SEQVKISQVF CCEGLLLCIL KDDDTKIVVW NPYLGQTRWI QTRLICCVSG 301: WKKYALGYGN NSENRSCRSP KILRVTDNFN IFSENIPLQY EIYDFDSDVW TTLDVSPHWF IMSERGLSLK GNTYWGAKER HAYGSIDHII CFDFTRERFG 401: PLLPLPFSAW GAQFASLSSV REDKITALFQ NCRAYKLELW ITTKIDVNNA TWSKFFTMDT PYLHEILSLK TFFIDEENKI VVVSNKERDT KGDLTHDSID 501: IINGEARCLW KLGLGKPADK NCWPLVCPYV PSVVQIKQHK GGKTKEQSDY KRH |
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
See Also |
|
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)