AT1G65850.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Disease resistance protein (TIR-NBS-LRR class) family | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, LP.02 two leaves visible, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G38340.1); Has 26846 Blast hits to 18519 proteins in 671 species: Archae - 18; Bacteria - 1504; Metazoa - 2889; Fungi - 149; Plants - 21378; Viruses - 2; Other Eukaryotes - 906 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:24494734..24498485 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 118952.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.26 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.21 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1036 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MTSMIASRQQ SQRSCPICAT PFPSSSSSHK WTHQVFPSFR GEDVRRGFLS HIHKEFQRKG ITPFIDNEIK RGESIGLEII HAIRESKIAI VLLSRNYASS 0101: SWCLDELVEI MKCKEEFSQI VIPIFYRVDP SDVKKLTGNF GNVFKNNCVG KTNEVIRKWR QALAKMGTTT GYDSRNWDNE ATMIENIATD ISNMLNYSTP 0201: SRDFDGLIGM RAHMKVMEPM LCLHSDEVRM IGIWGPSGIG KTTIARILFS QFSDSFELSV FMENVKELMY TRPVCSDEYS AKLHLQKQFM SQIINHKDIE 0301: IPHLGVVEDR LKDKKVFIVL DNIDQSIQLD AIAKESRWFG HGSRIIITTQ DRKLLKAHDG INHIYNVNFP SAYEACQIFC MYAFGQKFPK DGFEELAWEV 0401: AKLLGGLPLG LRVMGSHFRG MSKHEWINAL PRLRTRLDAN IQSILKFSYN ALCEEDKDLF LYIACLFNNK RIEKVEEHLA EKSLNVKQGL HVLTEKSLIS 0501: IEGGRIKMHN LLEQLGKEIV RHGLGHQPIR EPGKRQFLVD TRDICELLTN DTGSKSVIGI HFYSSELSSE LNISERAFEG MPNLKFLRFY YRYGDESDKL 0601: YLPQGLNYLS QKLKILEWDH FPLTCMPSNF CTEYLVELNM RFSKLHKLWE GNRPLANLNW MYLNHSKILK ELPDLSTATN LQELFLVKCS SLVELPSSIG 0701: KATNLQKLYL NMCTSLVELP SSIGNLHKLQ KLTLNGCSKL EVLPANINLE SLDELDLTDC LVLKRFPEIS TNIKVLKLLR TTIKEVPSSI KSWPRLRDLE 0801: LSYNQNLKGF MHALDIITTM YFNDIEMQEI PLWVKKISRL QTLILNGCKK LVSLPQLPDS LSYLKVVNCE SLERLDCSFH NPKMSLGFIN CLKLNKEAKE 0901: LIIQITTKCT VLPGREVPVY FTHRTKNGSS LRVNLNRRPL STASRFKACI LLVNKYCKEN EVKEVFGRKM MKASYCIIDL GLDVQCRPTH HFLPPSLTEH 1001: LYIFDFEADV TSNELFCDFQ VDSNEMVIKE CGIIQL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)