AT1G65730.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : YELLOW STRIPE like 7 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Arabidopsis thaliana metal-nicotianamine transporter YSL4 | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
YELLOW STRIPE like 7 (YSL7); FUNCTIONS IN: oligopeptide transporter activity; INVOLVED IN: oligopeptide transport, transmembrane transport; LOCATED IN: plasma membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter OPT superfamily (InterPro:IPR004813); BEST Arabidopsis thaliana protein match is: YELLOW STRIPE like 5 (TAIR:AT3G17650.1); Has 1836 Blast hits to 1794 proteins in 556 species: Archae - 19; Bacteria - 893; Metazoa - 0; Fungi - 266; Plants - 510; Viruses - 1; Other Eukaryotes - 147 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:24442639..24446122 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 75705.20 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.32 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.47 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 688 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEVERSKKDD DLNNGSKSNE EEEISVERIF EESNEIPPPW QKQLTFRALI VSFILAILFT FVVMKLNLTT GIIPSLNISA GLLGFFFVKS WTKILNKAGF 101: LKQPFTRQEN TVIQTCVVAS SGIAFSGGFG SYLFGMSDVV AKQSAEANTP LNIKNPHLGW MIGFLFVVSF LGLFSVVPLR KIMIVDFKLT YPSGTATAHL 201: INSFHTPQGA KLAKKQVRAL GKFFSFSFLW GFFQWFFATG DGCGFANFPT FGLKAYENKF YFDFSATYVG VGMICPYLIN VSLLIGAILS WGVMWPLIGA 301: QKGKWYAADL SSTSLHGLQG YRVFIAIAMI LGDGLYNFIK VLGRTVFGLY KQFKNKDVLP INDHTSTAPV TISYDDKRRT ELFLKDRIPS WFAVTGYVVL 401: AIVSIITVPH IFHQLKWYHI LIMYIIAPVL AFCNAYGCGL TDWSLASTYG KLAIFTIGAW AGASNGGVLA GLAACGVMMN IVSTASDLMQ DFKTGYMTLA 501: SPRSMFLSQA IGTAMGCVIS PCVFWLFYKA FPDFGQPGTA YPAPYALVYR NMSILGVEGF SALPKHCLML CYIFFAAAVI VNGIRDALGP KWARFIPLPM 601: AMAIPFYLGG YFTIDMCLGS LILFIWRKLN KPKADAYSSA VASGLICGEG IWTLPSSILA LAGVKAPICM KFLSMASNNK VDAFLNPS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)