AT1G65630.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 0.995 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||
| FP Images |
Arabidopsis cell culture (mitochondrial marker)
Arabidopsis cell culture (plastidal marker)
|
||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : DegP protease 3 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a putative DegP protease. | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
DegP protease 3 (DegP3); FUNCTIONS IN: serine-type peptidase activity, catalytic activity, serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: mitochondrion; EXPRESSED IN: shoot apex, leaf, stamen; EXPRESSED DURING: LP.06 six leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Serine endopeptidase DegP2 (InterPro:IPR015724), Serine/cysteine peptidase, trypsin-like (InterPro:IPR009003), Peptidase S1C, HrtA/DegP2/Q/S (InterPro:IPR001940), Peptidase S1/S6, chymotrypsin/Hap (InterPro:IPR001254), PDZ/DHR/GLGF (InterPro:IPR001478); BEST Arabidopsis thaliana protein match is: DegP protease 10 (TAIR:AT5G36950.1); Has 14044 Blast hits to 14031 proteins in 2490 species: Archae - 101; Bacteria - 10011; Metazoa - 289; Fungi - 18; Plants - 375; Viruses - 0; Other Eukaryotes - 3250 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:-:24406542..24409068 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 61715.70 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.87 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.27 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 559 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSFLCVRTVS RFRSLSRALA PGFLLLHGNA VPKTAVFFRQ QSSNTRLFSS YTAPSGVEEN NSKSALKNKL PPGKEVSSKD AKEKITTSAI DLALNSVVKV 101: FTVSSKPRLF QPWQITMQSE STGSGFVISG KKILTNAHVV ANQTSVKVRK HGSTTKYKAK VQAVGHECDL AILEIDNDKF WEGMNPLELG DIPSMQDTVY 201: VVGYPKGGDT ISVSKGVVSR VGPIKYSHSG TELLAIQIDA AINNGNSGGP VIMGNKVAGV AFESLCYSDS IGYIIPTPVI RHFLNAIEES GEDVSFGSIN 301: LTYQKMDNDQ LRKDFKMSDK MTGILINKIN PLSDVHKVLK KDDIILAIDG VPIGNDSSVH FRKKERITFK HLVSMKKPCE TALLKVLREG KEYEFNSSLK 401: SVPPLVPKRQ YDKSASYYIF GGLVFLPLTK PYIDSSCVSE SALGKMPKKA GEQVVIISQI LEDDINTGYS IFEDFQVKKV NGVQVHNLKH LYKLVEECCT 501: ETVRMDLEKD KVITLDYKSA KKVTSKILKS LKIPSAVSED LQPKQQNKRS KVPPKSKEH |
||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)