AT1G65550.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.877 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Xanthine/uracil permease family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Xanthine/uracil permease family protein; FUNCTIONS IN: transmembrane transporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Xanthine/uracil/vitamin C permease (InterPro:IPR006043); BEST Arabidopsis thaliana protein match is: Xanthine/uracil/vitamin C permease (TAIR:AT5G25420.1); Has 8520 Blast hits to 8482 proteins in 1844 species: Archae - 65; Bacteria - 6911; Metazoa - 346; Fungi - 119; Plants - 452; Viruses - 1; Other Eukaryotes - 626 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:-:24367694..24370800 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 60351.40 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.73 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.46 | ||||||||||||||||||||||||||||||||||||||||
| Length | 541 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTNGGGGNNG AANRTEELQP HPVKEQLPGI QYCVNSPPPW LEAVVLGFQH YLLSLGITVL IPSVLVPLMG GGYAEKVKVI QTLLFVSGLT TLFQSFFGTR 101: LPVIAVASYA YIIPITSIIY STRFTYYTDP FERFVRTMRS IQGALIITGC FQVLICILGV WRNIVRFLSP LSIAPLATFT GLGLYHIGFP LLARCVEVGL 201: PGLILLIFVT QYLPRFLKMK KGVMILDGSR CDRYGMILCI PLVWLFAQLL TSSGVYDHKS HTTQTSCRTD RTGLITNTPW IYIPYPFQWG SPTFDITDSF 301: AMMAASFVTL FESTGLFYAS ARYGSATPIP PSVVSRGTCW LGVGVLLNGM LGGITGITTS TENVGLLAMT KIGSRRVIQI SAAFMIFFSI FGKFGAFFAS 401: IPLPIMASLY CIVLCFVSSV GLSYLQFCNL NSFNIKFILG FSFFMAISIP QYFREYYNGG WRSDHHSNWL EDMIRVIFMS HTTVAAIIAI VLDCTLCRDS 501: DEAKKDCGMK WWDKFRLYNL DVRNDEFYGL PCRLNKFFPS H |
||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)