suba logo
AT1G65380.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plasma membrane 0.989
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:19933383 (2010): endoplasmic reticulum
  • PMID:19933383 (2010): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Leucine-rich repeat (LRR) family protein
Curator
Summary (TAIR10)
Receptor-like protein containing leucine-rich repeats. Regulates both meristem and organ development in Arabidopsis.
Computational
Description (TAIR10)
clavata 2 (CLV2); CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT5G63930.1); Has 98590 Blast hits to 28947 proteins in 1129 species: Archae - 27; Bacteria - 4991; Metazoa - 24209; Fungi - 1144; Plants - 60409; Viruses - 6; Other Eukaryotes - 7804 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G65380-MONOMERBioGrid:28070eggNOG:COG4886eggNOG:KOG0619
EMBL:AC004512EMBL:AF177672EMBL:AF177673EMBL:AF177674
EMBL:AF528591EMBL:AF528592EMBL:AF528593EMBL:AF528594
EMBL:AF528595EMBL:AF528596EMBL:AF528597EMBL:AF528598
EMBL:AF528599EMBL:AF528600EMBL:AF528601EMBL:AF528602
EMBL:AF528603EMBL:AF528604EMBL:AF528605EMBL:AF528606
EMBL:AF528607EMBL:AF528608EMBL:AF528609EMBL:AF528610
EMBL:AF528611EMBL:AY065442EMBL:AY096537EMBL:CP002684
EnsemblPlants:AT1G65380EnsemblPlants:AT1G65380.1entrez:842849Gene3D:3.80.10.10
GeneID:842849Genevisible:O80809GO:GO:0005886GO:GO:0007275
GO:GO:0016020GO:GO:0016021GO:GO:0033612GO:GO:0048507
Gramene:AT1G65380.1hmmpanther:PTHR27000hmmpanther:PTHR27000:SF56InParanoid:O80809
InterPro:IPR001611InterPro:IPR003591InterPro:IPR032675KEGG:ath:AT1G65380
OMA:GPISIWIPaxDb:O80809Pfam:O80809Pfam:PF00560
Pfam:PF13855Pfscan:PS51450PhylomeDB:O80809PIR:T02361
PRIDE:O80809PRO:PR:O80809PROSITE:PS51450ProteinModelPortal:O80809
Proteomes:UP000006548RefSeq:NP_176717.1SMART:SM00369SMR:O80809
STRING:3702.AT1G65380.1SUPFAM:SSF52058TAIR:AT1G65380tair10-symbols:AtRLP10
tair10-symbols:CLV2TMHMM:TMhelixUniGene:At.17109UniProt:O80809
Coordinates (TAIR10) chr1:+:24286943..24289105
Molecular Weight (calculated) 79232.30 Da
IEP (calculated) 5.78
GRAVY (calculated) 0.08
Length 720 amino acids
Sequence (TAIR10)
(BLAST)
001: MIKIADFTLF FFIFVFSPSL PLAQSQLPDL DPQDKASLLI FRVSIHDLNR SLSTWYGSSC SNWTGLACQN PTGKVLSLTL SGLNLSSQIH PSLCKLSSLQ
101: SLDLSHNNFS GNIPSCFGSL RNLRTLNLSR NRFVGSIPAT FVSLKELREV VLSENRDLGG VVPHWFGNFS MNLERVDFSF CSFVGELPES LLYLKSLKYL
201: NLESNNMTGT LRDFQQPLVV LNLASNQFSG TLPCFYASRP SLSILNIAEN SLVGGLPSCL GSLKELSHLN LSFNGFNYEI SPRLMFSEKL VMLDLSHNGF
301: SGRLPSRISE TTEKLGLVLL DLSHNSFSGD IPLRITELKS LQALRLSHNL LTGDIPARIG NLTYLQVIDL SHNALTGSIP LNIVGCFQLL ALMISNNNLS
401: GEIQPELDAL DSLKILDISN NHISGEIPLT LAGLKSLEIV DISSNNLSGN LNEAITKWSN LKYLSLARNK FSGTLPSWLF KFDKIQMIDY SSNRFSWFIP
501: DDNLNSTRFK DFQTGGGEGF AEPPGKVEIK ISAAVVAKDE LSFSYNLLSM VGIDLSDNLL HGEIPEALFR QKNIEYLNLS YNFLEGQLPR LEKLPRLKAL
601: DLSHNSLSGQ VIGNISAPPG LTLLNLSHNC FSGIITEKEG LGKFPGALAG NPELCVETPG SKCDPANIDA SQEEIYQNEL VEGPISIWIF CLSAFISFDF
701: GVLGIFCSAR ARSYILQTKA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)