AT1G65210.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:cytosol 0.772 What is SUBAcon? |
|
||||||||||||||||||||||||||||
Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||
Description (TAIR10) | protein_coding : Galactose-binding protein | ||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||
Computational Description (TAIR10) |
Galactose-binding protein; CONTAINS InterPro DOMAIN/s: Rhamnogalacturonate lyase (InterPro:IPR010325), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: Rhamnogalacturonate lyase family protein (TAIR:AT4G38030.1); Has 208 Blast hits to 151 proteins in 22 species: Archae - 0; Bacteria - 16; Metazoa - 0; Fungi - 0; Plants - 192; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||
Protein Annotations |
|
||||||||||||||||||||||||||||
Coordinates (TAIR10) | chr1:+:24224812..24225815 | ||||||||||||||||||||||||||||
Molecular Weight (calculated) | 28635.00 Da | ||||||||||||||||||||||||||||
IEP (calculated) | 10.06 | ||||||||||||||||||||||||||||
GRAVY (calculated) | -0.56 | ||||||||||||||||||||||||||||
Length | 248 amino acids | ||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MSKPIRNLDG PSGRAPTVQQ IRNKHGTREV IVDNGIISVS FSSPQGLITG IKYKGVNNVL HPHQRAREYF VPEPYKNTMN PLYLNHTDKF RQYGLWQRYT 101: ELYPNHDLIY TIGVSNYSKD WFYSQVTRKI GDSTYTPTTW QTVFHLPYVN MRGSYTLQLA LASAAWANLQ VRFNNEYTRP FFSTGYIGRD NAIARHGIHG 201: LYRLYSINVP GRLLRTGTNT IYLRQAKASG PLEGVMYDYI RLEEPSRE |
||||||||||||||||||||||||||||
See Also |
|
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)