AT1G65200.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.612 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Ubiquitin carboxyl-terminal hydrolase-related protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Ubiquitin carboxyl-terminal hydrolase-related protein; FUNCTIONS IN: ubiquitin thiolesterase activity, zinc ion binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF627 (InterPro:IPR006866), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), Zinc finger, C2H2-type (InterPro:IPR007087), Protein of unknown function DUF629 (InterPro:IPR006865); BEST Arabidopsis thaliana protein match is: Ubiquitin carboxyl-terminal hydrolase-related protein (TAIR:AT1G65130.1); Has 289 Blast hits to 258 proteins in 49 species: Archae - 0; Bacteria - 10; Metazoa - 28; Fungi - 6; Plants - 224; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:24218470..24222789 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 126540.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.72 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.29 | ||||||||||||||||||||||||||||||||||||
| Length | 1101 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MERPTLEDAN SENLFKRAYD SYFAKDYIKA LEIIEDLRFV QGNDRVCVNA LQGQIFKELA KKTENTDVKV AYLLGSVQCV SIAPALSSMA AISLFTLAQQ 0101: IQSVVYYKKS VRKAKETLYH LSVNVQDPEF TKKEQKAMVS VIKIAESRIA ESKTRLVVKN CEQKEDVDTR KSEPDFIKGL MLYWAGLNVE IKRNFMKVST 0201: AELTSYVEGL YGSEGRDALE QVLTFAREEG KWRFWMCRSC SNKFTSAEEC KNHLDQEHCA KFIPNETKHM PQRISKVWSR KISIGGWEPV DAAAAIELIK 0301: NRLEDVKEFA YENGWSKDWP LAADEKRSKL LKEIQLLLVL FWDCKIFTCS IRDWVMGLTV KHFEKFEVSK HTLTDCHLVE TPQIICFCEC DELNQILEFL 0401: KKIKCERDDG TDLVCRVVES FYCATQVKEK LDFDPQFSVL LLDKRLLQCK ISRFDDEGTI SVFDPNVHYA NAHAQGGYIL SWLVDNSSED KIFRFPTPIR 0501: MHNLDIWVAV LKAVWLTCMT LATKYAKKWK LLDYDAALTA AKNLCICEDV KRRNLQKDQW TSYASLLCDT CEEHLRRDAG KSLNAKLFLC VVQDVFKGAS 0601: FPTFNFLNCI NVIREHKDLS DDIVIKSIDL LKLVVTKKVV LIDSRFLLVE RSRINLLNSL TRLSVFDYRS YILRPMKELI LDGIVYMENK AKLAVVEADL 0701: ISEEKQEEGM TLPSKKKKNK NNKKNSTSMS SHLDKTVQHE HSANLELDST SPSLKPVEED TLTSESGLLE MKSNINNQEE TTKALHGEDS LSKHPVSAHE 0801: EATTRYNSIL DMVLKALCNL KVLKEDLVHN RQPFSDNQVP CVLRDFFSAF VSEQIEDEGF YSNLLSGLLA SLEEVHSMSN DAAEVVIAIL EFWQCWKSPQ 0901: RESLVTRLFT LEEYERMKCS KCRKMPNYPE QRSYGVVIAA DSIRDLKCAF GNIKFGDIIK VIRMEDKMLC DIKTRGCGKA NFVRHTISSC PPIFTIVLKW 1001: EKNETEKEIS GTLKAMDWEI DISKLYEGLE PNTNYRLVSM IGCGEEGEYI CMAYKKNRWI SLRHEALIEE VVGIWKSVVR FCGERRVRPE ILFYEAAGLD 1101: Q |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)